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Transducin/WD40 repeat-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 830737, updated on 18-Sep-2024

Summary

Official Full Name
Transducin/WD40 repeat-like superfamily protein
Primary source
TAIR:AT5G08390
Locus tag
AT5G08390
See related
Araport:AT5G08390
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F8L15.120; F8L15_120
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Genomic context

Location:
chromosome: 5
Exon count:
19
Sequence:
Chromosome: 5; NC_003076.8 (2700959..2707273)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene alpha-galactosidase 1 Neighboring gene transmembrane protein, putative (DUF 3339) Neighboring gene structural maintenance of chromosomes-like protein, putative (DUF3531) Neighboring gene Radical SAM superfamily protein Neighboring gene ferredoxin/thioredoxin reductase subunit A (variable subunit) 2

General gene information

NM_120923.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Component Evidence Code Pubs
part_of Cul4-RING E3 ubiquitin ligase complex ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
part_of katanin complex IEA
Inferred from Electronic Annotation
more info
 
part_of katanin complex IPI
Inferred from Physical Interaction
more info
PubMed 
located_in microtubule cytoskeleton IDA
Inferred from Direct Assay
more info
PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
 

General protein information

Preferred Names
Transducin/WD40 repeat-like superfamily protein
NP_568194.2
  • Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT5G23430.1); Has 114222 Blast hits to 41452 proteins in 998 species: Archae - 86; Bacteria - 11863; Metazoa - 46637; Fungi - 24709; Plants - 15354; Viruses - 6; Other Eukaryotes - 15567 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    2700959..2707273
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_120923.3NP_568194.2  Transducin/WD40 repeat-like superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_568194.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4KB17, Q0WV51, Q9FT96
    UniProtKB/TrEMBL
    A0A178UIC5, A0A5S9Y2I7
    Conserved Domains (3) summary
    cd00200
    Location:9261
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:6399
    7WD40; WD40 repeat [structural motif]
    pfam13925
    Location:680831
    Katanin_con80; con80 domain of Katanin