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transcriptional regulator of RNA polII, SAGA, subunit [ Arabidopsis thaliana (thale cress) ]

Gene ID: 829532, updated on 18-Sep-2024

Summary

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Official Full Name
transcriptional regulator of RNA polII, SAGA, subunit
Primary source
TAIR:AT4G33890
Locus tag
AT4G33890
See related
Araport:AT4G33890
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F17I5.80; F17I5_80
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Genomic context

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Location:
chromosome: 4
Exon count:
2
Sequence:
Chromosome: 4; NC_003075.7 (16249614..16251383)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene uncharacterized protein Neighboring gene Galactose oxidase/kelch repeat superfamily protein Neighboring gene Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Three functionally redundant plant-specific paralogs are core subunits of the SAGA histone acetyltransferase complex in Arabidopsis. Wu CJ, et al. Mol Plant, 2021 Jul 5. PMID 33737195
  2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_119547.5
NM_202948.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Component Evidence Code Pubs
part_of SAGA-type complex IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
transcriptional regulator of RNA polII, SAGA, subunit
NP_195115.1
  • unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G14850.1); Has 133 Blast hits to 131 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 129; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
NP_974677.1
  • unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G14850.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    16249614..16251383
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_119547.5 → NP_195115.1  transcriptional regulator of RNA polII, SAGA, subunit [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_195115.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654FV90, A0A7G2F7U8, O81757
    Conserved Domains (1) summary
    pfam12767
    Location:9 → 282
    SAGA-Tad1; Transcriptional regulator of RNA polII, SAGA, subunit

  2. NM_202948.1 → NP_974677.1  transcriptional regulator of RNA polII, SAGA, subunit [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_974677.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654FV90, A0A7G2F7U8, O81757
    Conserved Domains (1) summary
    pfam12767
    Location:9 → 282
    SAGA-Tad1; Transcriptional regulator of RNA polII, SAGA, subunit
Nucleotide Protein
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