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CBSX5 Cystathionine beta-synthase (CBS) family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 828855, updated on 18-Sep-2024

Summary

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Official Symbol
CBSX5
Official Full Name
Cystathionine beta-synthase (CBS) family protein
Primary source
TAIR:AT4G27460
Locus tag
AT4G27460
See related
Araport:AT4G27460
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
CBS domain containing protein 5; F27G19.60; F27G19_60
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Genomic context

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See CBSX5 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
2
Sequence:
Chromosome: 4; NC_003075.7 (13732832..13734531)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene fiber (DUF1218) Neighboring gene protochlorophyllide oxidoreductase B Neighboring gene aluminum induced protein with YGL and LRDR motifs Neighboring gene RING membrane-anchor 3 Neighboring gene Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Integrative Analysis from the Epigenome to Translatome Uncovers Patterns of Dominant Nuclear Regulation during Transient Stress. Lee TA, et al. Plant Cell, 2019 Nov. PMID 31519798, Free PMC Article
  2. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
  3. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_118881.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within cellular response to hypoxia HEP PubMed 
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Cystathionine beta-synthase (CBS) family protein
NP_194476.2
  • Cystathionine beta-synthase (CBS) family protein; CONTAINS InterPro DOMAIN/s: Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: CBS domain-containing protein (TAIR:AT5G53750.1); Has 145 Blast hits to 145 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 144; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    13732832..13734531
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_118881.3 → NP_194476.2  Cystathionine beta-synthase (CBS) family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_194476.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q0V7Z3, Q5HZ39, Q84WQ5, Q9SZS1
    UniProtKB/TrEMBL
    A0A178V3C0, A0A654FTI6
    Conserved Domains (1) summary
    pfam00571
    Location:334 → 385
    CBS; CBS domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q84WQ5.2

Gene LinkOut

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