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CYCD6;1 Cyclin D6;1 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 828000, updated on 18-Sep-2024

Summary

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Official Symbol
CYCD6;1
Official Full Name
Cyclin D6;1
Primary source
TAIR:AT4G03270
Locus tag
AT4G03270
See related
Araport:AT4G03270
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
Cyclin D6;1; F4C21.20; F4C21_20
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Genomic context

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See CYCD6;1 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
6
Sequence:
Chromosome: 4; NC_003075.7 (1431844..1433861, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene G-type lectin S-receptor-like Serine/Threonine-kinase Neighboring gene Homeodomain-like superfamily protein Neighboring gene frataxin-like protein Neighboring gene Outer arm dynein light chain 1 protein Neighboring gene tRNA-Thr Neighboring gene photosynthetic electron transfer C

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A PHABULOSA-Controlled Genetic Pathway Regulates Ground Tissue Patterning in the Arabidopsis Root. Bertolotti G, et al. Curr Biol, 2021 Jan 25. PMID 33176130, Free PMC Article
  2. Functional modules in the Arabidopsis core cell cycle binary protein-protein interaction network. Boruc J, et al. Plant Cell, 2010 Apr. PMID 20407024, Free PMC Article
  3. Targeted interactomics reveals a complex core cell cycle machinery in Arabidopsis thaliana. Van Leene J, et al. Mol Syst Biol, 2010 Aug 10. PMID 20706207, Free PMC Article
  4. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. A PHABULOSA-Controlled Genetic Pathway Regulates Ground Tissue Patterning in the Arabidopsis Root.
    Title: A PHABULOSA-Controlled Genetic Pathway Regulates Ground Tissue Patterning in the Arabidopsis Root.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001340443.1
NM_116565.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Cyclin D6;1
NP_192236.1
  • Cyclin D6;1 (CYCD6;1); FUNCTIONS IN: cyclin-dependent protein kinase activity; INVOLVED IN: regulation of cell cycle; LOCATED IN: nucleus; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: F mature embryo stage, 4 leaf senescence stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Cyclin, C-terminal (InterPro:IPR004367), Cyclin D (InterPro:IPR015451), Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Cyclin, N-terminal (InterPro:IPR006671), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: CYCLIN D4;1 (TAIR:AT5G65420.1); Has 2035 Blast hits to 2034 proteins in 193 species: Archae - 0; Bacteria - 0; Metazoa - 1002; Fungi - 29; Plants - 874; Viruses - 2; Other Eukaryotes - 128 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    1431844..1433861 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_116565.2 → NP_192236.1  Cyclin D6;1 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_192236.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9ZR04
    UniProtKB/TrEMBL
    A0A178V0V4
    Conserved Domains (2) summary
    pfam00134
    Location:29 → 154
    Cyclin_N; Cyclin, N-terminal domain
    pfam02984
    Location:156 → 252
    Cyclin_C; Cyclin, C-terminal domain

  2. NM_001340443.1 → NP_001329275.1  Cyclin D6;1 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UYR9, A0A1P8B774
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9ZR04.1

Gene LinkOut

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