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RNA-binding; reverse transcriptase, putative (DUF1204) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 827817, updated on 18-Sep-2024

Summary

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Official Full Name
RNA-binding; reverse transcriptase, putative (DUF1204)
Primary source
TAIR:AT4G20700
Locus tag
AT4G20700
See related
Araport:AT4G20700
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F21C20.50; F21C20_50
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Genomic context

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Location:
chromosome: 4
Exon count:
3
Sequence:
Chromosome: 4; NC_003075.7 (11097843..11100408)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene cysteine-rich repeat secretory-like protein Neighboring gene cysteine-rich repeat secretory protein, putative (DUF26) Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene miscRNA Neighboring gene receptor-like kinase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

General gene information

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NM_118188.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
RNA-binding; reverse transcriptase, putative (DUF1204)
NP_193802.1
  • CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1204 (InterPro:IPR009596); BEST Arabidopsis thaliana protein match is: RNA binding;RNA-directed DNA polymerases (TAIR:AT4G20520.1); Has 137 Blast hits to 137 proteins in 35 species: Archae - 8; Bacteria - 23; Metazoa - 36; Fungi - 6; Plants - 62; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    11097843..11100408
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001341452.1 → NP_001329281.1  RNA-binding; reverse transcriptase, putative (DUF1204) [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B782

  2. NM_118188.2 → NP_193802.1  RNA-binding; reverse transcriptase, putative (DUF1204) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_193802.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9SVH7
    Conserved Domains (1) summary
    pfam06721
    Location:303 → 529
    DUF1204; Protein of unknown function (DUF1204)
Nucleotide Protein
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