NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|15233373|ref|NP_193802|]
View 

RNA-binding; reverse transcriptase, putative (DUF1204) [Arabidopsis thaliana]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
DUF1204 pfam06721
Protein of unknown function (DUF1204); This family represents the C-terminus of a number of ...
303-529 5.69e-135

Protein of unknown function (DUF1204); This family represents the C-terminus of a number of Arabidopsis thaliana hypothetical proteins of unknown function. Family members contain a conserved DFD motif.


:

Pssm-ID: 284198 [Multi-domain]  Cd Length: 243  Bit Score: 391.06  E-value: 5.69e-135
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233373   303 DRLTYLYERCVRSLSVDATNAKDAHEALAVEKEKVAQALADLARSQDDAKEMKRKYDELAGRALSEMKRLRERRLEYAEF 382
Cdd:pfam06721   1 DKLDELLEKCLESASKDAAHAKDAHAALAVEKEKMAEALADLARCQDDAEEEKEKTDELADRAKSEKKRLRERREEYAEF 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233373   383 VRRSALDKMAELVQKRLDRIKAHIDDTKAAEPKFLEFNQVSGNIKTLEALVEGGEVEMKSDDMMLRLVADAEELEAEVKA 462
Cdd:pfam06721  81 QRRKALDHMADLFQARLDRIKAHIDDKKAAEPKFLDFNQVCGNIALLDALVEAGEIEIKSDDLMLRLIADADALEAEVEA 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233373   463 FGITDLMDGDFDVRTLFAELSPDNRNSVPPPTEGEDLADGRGECEGQAGERIVGQTEVRD----------------EIAD 526
Cdd:pfam06721 161 FEITDIEDDDFDVRTLFAELLEDEHNSFEPPAEGEDLADGHGECEAEADERIVGETEVEDasqrkpetpgplpddpAAAD 240

                  ...
gi 15233373   527 ARD 529
Cdd:pfam06721 241 APD 243
 
Name Accession Description Interval E-value
DUF1204 pfam06721
Protein of unknown function (DUF1204); This family represents the C-terminus of a number of ...
303-529 5.69e-135

Protein of unknown function (DUF1204); This family represents the C-terminus of a number of Arabidopsis thaliana hypothetical proteins of unknown function. Family members contain a conserved DFD motif.


Pssm-ID: 284198 [Multi-domain]  Cd Length: 243  Bit Score: 391.06  E-value: 5.69e-135
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233373   303 DRLTYLYERCVRSLSVDATNAKDAHEALAVEKEKVAQALADLARSQDDAKEMKRKYDELAGRALSEMKRLRERRLEYAEF 382
Cdd:pfam06721   1 DKLDELLEKCLESASKDAAHAKDAHAALAVEKEKMAEALADLARCQDDAEEEKEKTDELADRAKSEKKRLRERREEYAEF 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233373   383 VRRSALDKMAELVQKRLDRIKAHIDDTKAAEPKFLEFNQVSGNIKTLEALVEGGEVEMKSDDMMLRLVADAEELEAEVKA 462
Cdd:pfam06721  81 QRRKALDHMADLFQARLDRIKAHIDDKKAAEPKFLDFNQVCGNIALLDALVEAGEIEIKSDDLMLRLIADADALEAEVEA 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233373   463 FGITDLMDGDFDVRTLFAELSPDNRNSVPPPTEGEDLADGRGECEGQAGERIVGQTEVRD----------------EIAD 526
Cdd:pfam06721 161 FEITDIEDDDFDVRTLFAELLEDEHNSFEPPAEGEDLADGHGECEAEADERIVGETEVEDasqrkpetpgplpddpAAAD 240

                  ...
gi 15233373   527 ARD 529
Cdd:pfam06721 241 APD 243
 
Name Accession Description Interval E-value
DUF1204 pfam06721
Protein of unknown function (DUF1204); This family represents the C-terminus of a number of ...
303-529 5.69e-135

Protein of unknown function (DUF1204); This family represents the C-terminus of a number of Arabidopsis thaliana hypothetical proteins of unknown function. Family members contain a conserved DFD motif.


Pssm-ID: 284198 [Multi-domain]  Cd Length: 243  Bit Score: 391.06  E-value: 5.69e-135
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233373   303 DRLTYLYERCVRSLSVDATNAKDAHEALAVEKEKVAQALADLARSQDDAKEMKRKYDELAGRALSEMKRLRERRLEYAEF 382
Cdd:pfam06721   1 DKLDELLEKCLESASKDAAHAKDAHAALAVEKEKMAEALADLARCQDDAEEEKEKTDELADRAKSEKKRLRERREEYAEF 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233373   383 VRRSALDKMAELVQKRLDRIKAHIDDTKAAEPKFLEFNQVSGNIKTLEALVEGGEVEMKSDDMMLRLVADAEELEAEVKA 462
Cdd:pfam06721  81 QRRKALDHMADLFQARLDRIKAHIDDKKAAEPKFLDFNQVCGNIALLDALVEAGEIEIKSDDLMLRLIADADALEAEVEA 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233373   463 FGITDLMDGDFDVRTLFAELSPDNRNSVPPPTEGEDLADGRGECEGQAGERIVGQTEVRD----------------EIAD 526
Cdd:pfam06721 161 FEITDIEDDDFDVRTLFAELLEDEHNSFEPPAEGEDLADGHGECEAEADERIVGETEVEDasqrkpetpgplpddpAAAD 240

                  ...
gi 15233373   527 ARD 529
Cdd:pfam06721 241 APD 243
PEARLI-4 pfam05278
Arabidopsis phospholipase-like protein (PEARLI 4); This family contains several ...
319-382 5.71e-03

Arabidopsis phospholipase-like protein (PEARLI 4); This family contains several phospholipase-like proteins from Arabidopsis thaliana which are homologous to PEARLI 4.


Pssm-ID: 253129 [Multi-domain]  Cd Length: 234  Bit Score: 38.67  E-value: 5.71e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15233373   319 DATNAKDAHEA-LAVEKEKVAQALADLARSQDDAKEMKRKYDELAGRALS-EMKRLR-ERRLEYAEF 382
Cdd:pfam05278 155 TAVVEKERHERdVLLKKQEMEKQEAELVRKEKEVKEFREKVEEMAGRLGElEMKRLRlEKRLDFLGS 221
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH
HHS Vulnerability Disclosure