ERD3 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Symbol: ERD3
Official Full Name: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Primary source: TAIR:AT4G19120
Locus tag: AT4G19120
See related: Araport:AT4G19120
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: early-responsive to dehydration 3; T18B16.90; T18B16_90
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Genomic context

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See ERD3 in Genome Data Viewer

Location:: chromosome: 4

Exon count:: 8

Sequence:: Chromosome: 4; NC_003075.7 (10460241..10464306, complement)

Chromosome 4 - NC_003075.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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NM_001341325.1

Supported by ESTs:

NM_118031.4

Supported by ESTs:

NM_179077.2

Supported by ESTs:

Gene Ontology Provided by TAIR

Component	Evidence Code	Pubs
located_in Golgi apparatus	HDA more info	PubMed
located_in Golgi trans cisterna	HDA more info	PubMed
located_in endosome	HDA more info	PubMed
located_in nucleus	ISM Inferred from Sequence Model more info
located_in trans-Golgi network	HDA more info	PubMed

General protein information

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Preferred Names: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein

NP_567575.1

early-responsive to dehydration 3 (ERD3); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248, methyltransferase putative (InterPro:IPR004159); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT1G31850.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NP_849408.1

early-responsive to dehydration 3 (ERD3); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248, methyltransferase putative (InterPro:IPR004159); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT1G31850.2); Has 1146 Blast hits to 1130 proteins in 105 species: Archae - 6; Bacteria - 157; Metazoa - 0; Fungi - 3; Plants - 960; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003075.7 Reference assembly

Range

10460241..10464306 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_118031.4 → NP_567575.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_567575.1

Status: REVIEWED

UniProtKB/Swiss-Prot

O49670, Q94II3

UniProtKB/TrEMBL

A0A178V0E9

Conserved Domains (2) summary

pfam03141
Location:79 → 587

Methyltransf_29; Putative S-adenosyl-L-methionine-dependent methyltransferase

cl17173
Location:197 → 289

AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...
NM_001341325.1 → NP_001329718.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A178V0E9, A0A1P8B8K2
NM_179077.2 → NP_849408.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_849408.1

Status: REVIEWED

UniProtKB/Swiss-Prot

O49670, Q94II3

UniProtKB/TrEMBL

A0A178V0E9

Conserved Domains (2) summary

pfam03141
Location:79 → 587

Methyltransf_29; Putative S-adenosyl-L-methionine-dependent methyltransferase

cl17173
Location:197 → 289

AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...