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FAP1 Chalcone-flavanone isomerase family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 825492, updated on 18-Sep-2024

Summary

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Official Symbol
FAP1
Official Full Name
Chalcone-flavanone isomerase family protein
Primary source
TAIR:AT3G63170
Locus tag
AT3G63170
See related
Araport:AT3G63170
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
AtFAP1; fatty-acid-binding protein 1
Summary
Encodes a plastid stroma localized fatty acid binding protein involved in fatty acid metabolism.
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Genomic context

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See FAP1 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
4
Sequence:
Chromosome: 3; NC_003074.8 (23334574..23336081)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene MIRO-related GTP-ase 2 Neighboring gene outer envelope membrane protein Neighboring gene TIC-like protein Neighboring gene ribosome recycling factor, chloroplast precursor

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evolution of the chalcone-isomerase fold from fatty-acid binding to stereospecific catalysis. Ngaki MN, et al. Nature, 2012 May 13. PMID 22622584, Free PMC Article
  2. Proteomic study of the Arabidopsis thaliana chloroplastic envelope membrane utilizing alternatives to traditional two-dimensional electrophoresis. Froehlich JE, et al. J Proteome Res, 2003 Jul-Aug. PMID 12938931
  3. AT_CHLORO, a comprehensive chloroplast proteome database with subplastidial localization and curated information on envelope proteins. Ferro M, et al. Mol Cell Proteomics, 2010 Jun. PMID 20061580, Free PMC Article
  4. Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics. Nikolovski N, et al. Plant Physiol, 2012 Oct. PMID 22923678, Free PMC Article
  5. Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. Zybailov B, et al. PLoS One, 2008 Apr 23. PMID 18431481, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_116182.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables fatty acid binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables intramolecular lyase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within fatty acid metabolic process IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast HDA PubMed 
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in chloroplast envelope HDA PubMed 
located_in chloroplast stroma IDA
Inferred from Direct Assay
more info
 PubMed 
located_in cytosol HDA PubMed 
located_in plastid HDA PubMed 

General protein information

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Preferred Names
Chalcone-flavanone isomerase family protein
NP_567140.1
  • Chalcone-flavanone isomerase family protein; FUNCTIONS IN: intramolecular lyase activity; INVOLVED IN: cellular amino acid derivative biosynthetic process; LOCATED IN: mitochondrion, chloroplast, plastid, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chalcone isomerase, subgroup (InterPro:IPR003466), Chalcone isomerase (InterPro:IPR016087); BEST Arabidopsis thaliana protein match is: Chalcone-flavanone isomerase family protein (TAIR:AT2G26310.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    23334574..23336081
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_116182.5 → NP_567140.1  Chalcone-flavanone isomerase family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_567140.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9M1X2
    UniProtKB/TrEMBL
    A0A178V7B2, A0A5S9XNB0
    Conserved Domains (1) summary
    PLN03174
    Location:1 → 278
    PLN03174; Chalcone-flavanone isomerase-related; Provisional
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9M1X2.1

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