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IQD13 IQ-domain 13 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 825138, updated on 18-Sep-2024

Summary

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Official Symbol
IQD13
Official Full Name
IQ-domain 13
Primary source
TAIR:AT3G59690
Locus tag
AT3G59690
See related
Araport:AT3G59690
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
IQ-domain 13
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Genomic context

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See IQD13 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
7
Sequence:
Chromosome: 3; NC_003074.8 (22048557..22051673)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene elongation factor Neighboring gene Serine/Threonine-kinase Neighboring gene ncRNA Neighboring gene lectin-receptor kinase Neighboring gene NAD(P)-binding Rossmann-fold superfamily protein Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A Novel Plasma Membrane-Anchored Protein Regulates Xylem Cell-Wall Deposition through Microtubule-Dependent Lateral Inhibition of Rho GTPase Domains. Sugiyama Y, et al. Curr Biol, 2017 Aug 21. PMID 28803875
  2. Genome-Wide Identification and Characterization of Calcium Metabolism Related Gene Families in Arabidopsis thaliana and Their Regulation by Bacillus amyloliquefaciens Under High Calcium Stress. Gong J, et al. Front Plant Sci, 2021. PMID 34456948, Free PMC Article
  3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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NM_001339994.1
NM_115831.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in response to calcium ion IEP
Inferred from Expression Pattern
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
IQ-domain 13
NP_191528.1
  • IQ-domain 13 (IQD13); FUNCTIONS IN: calmodulin binding; LOCATED IN: plasma membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: IQ-domain 14 (TAIR:AT2G43680.1); Has 1694 Blast hits to 1201 proteins in 100 species: Archae - 0; Bacteria - 16; Metazoa - 93; Fungi - 40; Plants - 1224; Viruses - 44; Other Eukaryotes - 277 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    22048557..22051673
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_115831.3 → NP_191528.1  IQ-domain 13 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_191528.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9M199
    UniProtKB/TrEMBL
    A0A7G2EWB9
    Conserved Domains (2) summary
    smart00015
    Location:172 → 189
    IQ; Calmodulin-binding motif
    pfam13178
    Location:388 → 492
    DUF4005; Protein of unknown function (DUF4005)

  2. NM_001339994.1 → NP_001326850.1  IQ-domain 13 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9M199
    UniProtKB/TrEMBL
    A0A7G2EWB9
    Conserved Domains (2) summary
    smart00015
    Location:172 → 189
    IQ; Calmodulin-binding motif
    pfam13178
    Location:388 → 492
    DUF4005; Protein of unknown function (DUF4005)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9M199.1

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