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LOW protein: PPR containing protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 824483, updated on 18-Sep-2024

Summary

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Official Full Name
LOW protein: PPR containing protein
Primary source
TAIR:AT3G53170
Locus tag
AT3G53170
See related
Araport:AT3G53170
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
5
Sequence:
Chromosome: 3; NC_003074.8 (19704106..19706536, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene UDP-glucosyl transferase 73C7 Neighboring gene nodulin/glutamine synthase-like protein Neighboring gene Pectin lyase-like superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Proteomic analysis of the Arabidopsis nucleolus suggests novel nucleolar functions. Pendle AF, et al. Mol Biol Cell, 2005 Jan. PMID 15496452, Free PMC Article
  2. Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method. Bach-Pages M, et al. Biomolecules, 2020 Apr 24. PMID 32344669, Free PMC Article
  3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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NM_001339595.1
NM_001339598.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables mRNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  
located_in nucleolus HDA PubMed 

General protein information

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Preferred Names
LOW protein: PPR containing protein
NP_001319735.1
  • Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: glutamine biosynthetic process; LOCATED IN: nucleolus; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G48730.1); Has 41000 Blast hits to 13619 proteins in 279 species: Archae - 1; Bacteria - 35; Metazoa - 326; Fungi - 348; Plants - 39122; Viruses - 0; Other Eukaryotes - 1168 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    19704106..19706536 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001339596.1 → NP_001326325.1  LOW protein: PPR containing protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1I9LNX7
    Conserved Domains (2) summary
    PLN03218
    Location:141 → 492
    PLN03218; maturation of RBCL 1; Provisional
    sd00004
    Location:181 → 209
    PPR; PPR repeat [structural motif]

  2. NM_001339597.1 → NP_001326326.1  LOW protein: PPR containing protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1I9LNX8

  3. NM_001339595.1 → NP_001319735.1  LOW protein: PPR containing protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1I9LNX7
    Conserved Domains (2) summary
    PLN03218
    Location:141 → 492
    PLN03218; maturation of RBCL 1; Provisional
    sd00004
    Location:181 → 209
    PPR; PPR repeat [structural motif]

  4. NM_001339598.1 → NP_001326327.1  LOW protein: PPR containing protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4J999, Q9SCP4
    UniProtKB/TrEMBL
    A0A178V5V3
    Conserved Domains (5) summary
    TIGR00756
    Location:201 → 230
    PPR; pentatricopeptide repeat domain (PPR motif)
    sd00004
    Location:131 → 159
    PPR; PPR repeat [structural motif]
    pfam12854
    Location:161 → 192
    PPR_1; PPR repeat
    pfam13041
    Location:305 → 353
    PPR_2; PPR repeat family
    pfam13812
    Location:306 → 339
    PPR_3; Pentatricopeptide repeat domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9SCP4.1

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