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Glycosyl hydrolase family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 823857, updated on 18-Sep-2024

Summary

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Official Full Name
Glycosyl hydrolase family protein
Primary source
TAIR:AT3G47040
Locus tag
AT3G47040
See related
Araport:AT3G47040
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
10
Sequence:
Chromosome: 3; NC_003074.8 (17324102..17327152, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene F-box and associated interaction domains-containing protein Neighboring gene Glycosyl hydrolase family protein Neighboring gene miscRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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NM_001203095.1
NM_114571.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables beta-glucosidase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Glycosyl hydrolase family protein
NP_001190024.1
  • Glycosyl hydrolase family protein; FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, root; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 3, C-terminal (InterPro:IPR002772), Glycoside hydrolase, family 3, N-terminal (InterPro:IPR001764), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 3, active site (InterPro:IPR019800); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase family protein (TAIR:AT3G47000.1).
NP_190288.1
  • Glycosyl hydrolase family protein; FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, root; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 3, N-terminal (InterPro:IPR001764), Glycoside hydrolase, family 3, C-terminal (InterPro:IPR002772), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 3, active site (InterPro:IPR019800); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase family protein (TAIR:AT3G47000.1); Has 10727 Blast hits to 9894 proteins in 1605 species: Archae - 69; Bacteria - 6667; Metazoa - 14; Fungi - 1566; Plants - 482; Viruses - 0; Other Eukaryotes - 1929 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    17324102..17327152 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001339302.1 → NP_001326870.1  Glycosyl hydrolase family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1I9LQK9, A0A5S9XIT9

  2. NM_001339301.1 → NP_001326871.1  Glycosyl hydrolase family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1I9LQL0

  3. NM_001203095.1 → NP_001190024.1  Glycosyl hydrolase family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001190024.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9XIT9, F4JAB7
    Conserved Domains (3) summary
    COG1472
    Location:28 → 492
    BglX; Periplasmic beta-glucosidase and related glycosidases [Carbohydrate transport and metabolism]
    pfam01915
    Location:427 → 638
    Glyco_hydro_3_C; Glycosyl hydrolase family 3 C-terminal domain
    cl07971
    Location:30 → 390
    Glyco_hydro_3; Glycosyl hydrolase family 3 N terminal domain

  4. NM_114571.1 → NP_190288.1  Glycosyl hydrolase family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_190288.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9XIT9, Q9SD69
    Conserved Domains (3) summary
    COG1472
    Location:28 → 484
    BglX; Periplasmic beta-glucosidase and related glycosidases [Carbohydrate transport and metabolism]
    pfam01915
    Location:419 → 630
    Glyco_hydro_3_C; Glycosyl hydrolase family 3 C-terminal domain
    cl07971
    Location:30 → 382
    Glyco_hydro_3; Glycosyl hydrolase family 3 N terminal domain
Nucleotide Protein
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