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Vacuolar iron transporter (VIT) family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 823461, updated on 18-Sep-2024

Summary

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Official Full Name
Vacuolar iron transporter (VIT) family protein
Primary source
TAIR:AT3G43630
Locus tag
AT3G43630
See related
Araport:AT3G43630
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F22J12.3
Summary
The gene encodes nodulin-like3 whose transcript abundance was repressed under conditions of Fe-deficient growth.
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Genomic context

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Location:
chromosome: 3
Exon count:
1
Sequence:
Chromosome: 3; NC_003074.8 (15538816..15539418)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene pseudo Neighboring gene pseudo Neighboring gene pseudo

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Members of a small family of nodulin-like genes are regulated under iron deficiency in roots of Arabidopsis thaliana. Gollhofer J, et al. Plant Physiol Biochem, 2011 May. PMID 21411332
  2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables manganese ion transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in intracellular manganese ion homeostasis IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within response to iron ion IEP
Inferred from Expression Pattern
more info
 PubMed 

General protein information

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Preferred Names
Vacuolar iron transporter (VIT) family protein
NP_189949.1
  • Vacuolar iron transporter (VIT) family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF125, transmembrane (InterPro:IPR008217); BEST Arabidopsis thaliana protein match is: Vacuolar iron transporter (VIT) family protein (TAIR:AT3G43660.1); Has 1826 Blast hits to 1819 proteins in 633 species: Archae - 49; Bacteria - 1250; Metazoa - 0; Fungi - 98; Plants - 208; Viruses - 0; Other Eukaryotes - 221 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    15538816..15539418
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_114231.1 → NP_189949.1  Vacuolar iron transporter (VIT) family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_189949.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9M2C3
    UniProtKB/TrEMBL
    A0A5S9XHM0, A0A7G2ETP4
    Conserved Domains (1) summary
    cl00278
    Location:26 → 166
    CCC1_like; CCC1-related family of proteins
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9M2C3.1

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