U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Zinc finger C-x8-C-x5-C-x3-H type family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 821395, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Full Name
Zinc finger C-x8-C-x5-C-x3-H type family protein
Primary source
TAIR:AT3G18640
Locus tag
AT3G18640
See related
Araport:AT3G18640
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 3
Exon count:
5
Sequence:
Chromosome: 3; NC_003074.8 (6413270..6416599, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene nucleolin like 2 Neighboring gene DHHC-type zinc finger family protein Neighboring gene uracil dna glycosylase Neighboring gene AGAMOUS-like 103 Neighboring gene plant glycogenin-like starch initiation protein 1

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
  2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help
NM_001338349.1
NM_001338350.1
NM_112750.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

Go to the top of the page Help
Preferred Names
Zinc finger C-x8-C-x5-C-x3-H type family protein
NP_188494.1
  • Zinc finger C-x8-C-x5-C-x3-H type family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); BEST Arabidopsis thaliana protein match is: histone-lysine N-methyltransferases (TAIR:AT3G26850.2); Has 2096 Blast hits to 1919 proteins in 216 species: Archae - 1; Bacteria - 45; Metazoa - 857; Fungi - 199; Plants - 205; Viruses - 43; Other Eukaryotes - 746 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    6413270..6416599 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_112750.3 → NP_188494.1  Zinc finger C-x8-C-x5-C-x3-H type family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_188494.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    A0A1I9LRB7, Q56XB6, Q9LIH5
    UniProtKB/TrEMBL
    A0A5S9XEY9, A0A654F8H3
    Conserved Domains (1) summary
    smart00356
    Location:219 → 240
    ZnF_C3H1; zinc finger

  2. NM_001338349.1 → NP_001327119.1  Zinc finger C-x8-C-x5-C-x3-H type family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    A0A1I9LRB7, Q56XB6, Q9LIH5
    UniProtKB/TrEMBL
    A0A5S9XEY9, A0A654F8H3

  3. NM_001338350.1 → NP_001327120.1  Zinc finger C-x8-C-x5-C-x3-H type family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    A0A1I9LRB7, Q56XB6, Q9LIH5
    UniProtKB/TrEMBL
    A0A5S9XEY9, A0A654F8H3
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LIH5.1

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools