Zinc finger C-x8-C-x5-C-x3-H type family protein [Arabidopsis thaliana]
Protein Classification
zinc finger CCCH domain-containing protein( domain architecture ID 10646956)
zinc finger CCCH domain-containing protein similar to Homo sapiens Muscleblind-like proteins
List of domain hits
| Name | Accession | Description | Interval | E-value | ||
| ZnF_C3H1 | smart00356 | zinc finger; |
219-240 | 1.69e-04 | ||
zinc finger; : Pssm-ID: 214632 [Multi-domain] Cd Length: 27 Bit Score: 39.15 E-value: 1.69e-04
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| Name | Accession | Description | Interval | E-value | ||
| ZnF_C3H1 | smart00356 | zinc finger; |
219-240 | 1.69e-04 | ||
zinc finger; Pssm-ID: 214632 [Multi-domain] Cd Length: 27 Bit Score: 39.15 E-value: 1.69e-04
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| zf-CCCH | pfam00642 | Zinc finger C-x8-C-x5-C-x3-H type (and similar); |
219-242 | 4.20e-04 | ||
Zinc finger C-x8-C-x5-C-x3-H type (and similar); Pssm-ID: 459885 [Multi-domain] Cd Length: 27 Bit Score: 37.94 E-value: 4.20e-04
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| Name | Accession | Description | Interval | E-value | ||
| ZnF_C3H1 | smart00356 | zinc finger; |
219-240 | 1.69e-04 | ||
zinc finger; Pssm-ID: 214632 [Multi-domain] Cd Length: 27 Bit Score: 39.15 E-value: 1.69e-04
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| zf-CCCH | pfam00642 | Zinc finger C-x8-C-x5-C-x3-H type (and similar); |
219-242 | 4.20e-04 | ||
Zinc finger C-x8-C-x5-C-x3-H type (and similar); Pssm-ID: 459885 [Multi-domain] Cd Length: 27 Bit Score: 37.94 E-value: 4.20e-04
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| zf_CCCH_4 | pfam18345 | Zinc finger domain; This is a zinc finger domain found in Zinc finger CCCH-type with G patch ... |
220-240 | 9.36e-04 | ||
Zinc finger domain; This is a zinc finger domain found in Zinc finger CCCH-type with G patch domain-containing proteins such as ZIP. Functional studies indicate that ZIP specifically targets EGFR and represses its transcription, and that the zinc finger and the coiled-coil domains are central to that process. Pssm-ID: 465719 [Multi-domain] Cd Length: 19 Bit Score: 37.01 E-value: 9.36e-04
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| zf-CCCH_2 | pfam14608 | RNA-binding, Nab2-type zinc finger; This is an unusual zinc-finger family, and is represented ... |
219-240 | 8.35e-03 | ||
RNA-binding, Nab2-type zinc finger; This is an unusual zinc-finger family, and is represented by fingers 5-7 of Nab2. Nab2 ZnF5-7 are zinc-fingers of the type C-x8-C-x5-C-x3-H. Nab2 ZnFs function in the generation of export-competent mRNPs. Mab2 is a conserved polyadenosine-RNA-binding Zn finger protein required for both mRNA export and polyadenylation regulation and becomes attached to the mRNP after splicing and during or immediately after polyadenylation. The three ZnFs, 5-7, have almost identical folds and, most unusually, associate with one another to form a single coherent structural unit. ZnF5-7 bind to eight consecutive adenines, and chemical shift perturbations identify residues on each finger that interact with RNA. Pssm-ID: 464217 Cd Length: 19 Bit Score: 34.02 E-value: 8.35e-03
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| Blast search parameters | ||||
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