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F-box/RNI-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 821150, updated on 18-Sep-2024

Summary

Official Full Name
F-box/RNI-like superfamily protein
Primary source
TAIR:AT3G03040
Locus tag
AT3G03040
See related
Araport:AT3G03040
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T17B22.27
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Genomic context

Location:
chromosome: 3
Exon count:
4
Sequence:
Chromosome: 3; NC_003074.8 (684389..686639)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene F-box/RNI-like superfamily protein Neighboring gene cellulose synthase-like D3 Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein

General gene information

NM_111174.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
acts_upstream_of_or_within defense response IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
 

General protein information

Preferred Names
F-box/RNI-like superfamily protein
NP_186954.1
  • F-box/RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566); BEST Arabidopsis thaliana protein match is: F-box/RNI-like superfamily protein (TAIR:AT3G03030.1); Has 1805 Blast hits to 1758 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1805; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    684389..686639
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_111174.3NP_186954.1  F-box/RNI-like superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_186954.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9LDJ9
    UniProtKB/TrEMBL
    A0A5S9X8M4, A0A654F3M0
    Conserved Domains (3) summary
    smart00579
    Location:382462
    FBD; domain in FBox and BRCT domain containing plant proteins
    sd00032
    Location:137161
    LRR_2; leucine-rich repeat [structural motif]
    pfam00646
    Location:238
    F-box; F-box domain