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F-box associated ubiquitination effector protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 820847, updated on 18-Sep-2024

Summary

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Official Full Name
F-box associated ubiquitination effector protein
Primary source
TAIR:AT3G16020
Locus tag
AT3G16020
See related
Araport:AT3G16020
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
3
Sequence:
Chromosome: 3; NC_003074.8 (5437962..5439461)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene sulfate transporter 3;4 Neighboring gene MAR binding filament-like protein 1 Neighboring gene Pentatricopeptide repeat (PPR-like) superfamily protein Neighboring gene lectin protein kinase family protein Neighboring gene Translation machinery associated TMA7 Neighboring gene ncRNA Neighboring gene pyridoxine biosynthesis 1.2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
F-box associated ubiquitination effector protein
NP_188223.1
  • F-box associated ubiquitination effector protein; FUNCTIONS IN: phospholipase C activity; INVOLVED IN: intracellular signaling pathway, lipid metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Phospholipase C, phosphatidylinositol-specific, X domain (InterPro:IPR000909), F-box associated domain, type 1 (InterPro:IPR006527); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G32140.1); Has 386 Blast hits to 373 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 386; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    5437962..5439461
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001338199.1 → NP_001327740.1  F-box associated ubiquitination effector protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1I9LT88

  2. NM_001338198.1 → NP_001327741.1  F-box associated ubiquitination effector protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1I9LT88

  3. NM_112472.2 → NP_188223.1  F-box associated ubiquitination effector protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_188223.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654F7M4, F4J1E9
    Conserved Domains (1) summary
    pfam07734
    Location:55 → 98
    FBA_1; F-box associated
Nucleotide Protein
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