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transmembrane protein, putative (Protein of unknown function, DUF538) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 819935, updated on 18-Sep-2024

Summary

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Official Full Name
transmembrane protein, putative (Protein of unknown function, DUF538)
Primary source
TAIR:AT3G07470
Locus tag
AT3G07470
See related
Araport:AT3G07470
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
2
Sequence:
Chromosome: 3; NC_003074.8 (2386611..2388696, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein Neighboring gene transmembrane protein, putative (Protein of unknown function, DUF538) Neighboring gene 2Fe-2S ferredoxin-like superfamily protein Neighboring gene ARF-GAP domain 11

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The vegetative vacuole proteome of Arabidopsis thaliana reveals predicted and unexpected proteins. Carter C, et al. Plant Cell, 2004 Dec. PMID 15539469, Free PMC Article
  2. A proteomic strategy for global analysis of plant protein complexes. Aryal UK, et al. Plant Cell, 2014 Oct. PMID 25293756, Free PMC Article
  3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_001337715.1
NM_111625.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  
located_in plant-type vacuole HDA PubMed 
located_in secretory vesicle HDA PubMed 

General protein information

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Preferred Names
transmembrane protein, putative (Protein of unknown function, DUF538)
NP_566308.1
  • Protein of unknown function, DUF538; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF538 (InterPro:IPR007493); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF538 (TAIR:AT3G07460.1); Has 638 Blast hits to 638 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 637; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    2386611..2388696 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001337714.1 → NP_001326337.1  transmembrane protein, putative (Protein of unknown function, DUF538) [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A7G2EM64, Q9SRR9

  2. NM_111625.3 → NP_566308.1  transmembrane protein, putative (Protein of unknown function, DUF538) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_566308.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VHK2, A0A384LM28, A0A7G2EM64, Q94AG1
    Conserved Domains (1) summary
    pfam04398
    Location:32 → 138
    DUF538; Protein of unknown function, DUF538

  3. NM_001337715.1 → NP_001326338.1  transmembrane protein, putative (Protein of unknown function, DUF538) [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1I9LNZ1, A0A7G2EM64
Nucleotide Protein
Heading Accession and Version

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