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Arabidopsis thaliana transmembrane protein, putative (Protein of unknown function, DUF538) (AT3G07470), mRNA

NCBI Reference Sequence: NM_001337715.1

FASTA Graphics 

LOCUS       NM_001337715            1498 bp    mRNA    linear   PLN 20-OCT-2022
DEFINITION  Arabidopsis thaliana transmembrane protein, putative (Protein of
            unknown function, DUF538) (AT3G07470), mRNA.
ACCESSION   NM_001337715
VERSION     NM_001337715.1
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (bases 1 to 1498)
  AUTHORS   Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
            Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
            Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
            Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
            Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
            Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
            Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
            Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
            Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
            Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
            Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
            Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
            Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
            Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
            Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
            Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
            Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
            Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
            Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
            Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
            Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
            Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
            Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
            Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
            Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
            Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
            Yamada,M., Yasuda,M. and Tabata,S.
  CONSRTM   European Union Chromosome 3 Arabidopsis Sequencing Consortium;
            Institute for Genomic Research; Kazusa DNA Research Institute
  TITLE     Sequence and analysis of chromosome 3 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 408 (6814), 820-822 (2000)
   PUBMED   11130713
REFERENCE   2  (bases 1 to 1498)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 1498)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (bases 1 to 1498)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            This record is derived from an annotated genomic sequence
            (NC_003074).
FEATURES             Location/Qualifiers
     source          1..1498
                     /organism="Arabidopsis thaliana"
                     /mol_type="mRNA"
                     /db_xref="taxon:3702"
                     /chromosome="3"
                     /ecotype="Columbia"
     gene            1..1498
                     /locus_tag="AT3G07470"
                     /db_xref="Araport:AT3G07470"
                     /db_xref="GeneID:819935"
                     /db_xref="TAIR:AT3G07470"
     CDS             354..827
                     /locus_tag="AT3G07470"
                     /codon_start=1
                     /product="transmembrane protein, putative (Protein of
                     unknown function, DUF538)"
                     /protein_id="NP_001326338.1"
                     /db_xref="GeneID:819935"
                     /db_xref="Araport:AT3G07470"
                     /db_xref="TAIR:AT3G07470"
                     /translation="MMLRIVQIAFLCLVLVAGISISTAISETETIYEILLANGLPSGI
                     FPKGVREFTFDVETGRFSVYLNQACEAKYETEIHYDANITGTIGSAQISDLSGISAQE
                     LFLWFPVKGIRVDVPSSGLIYFDVGVVRKQYSLSLFETPRDCVPVRGIHKELLDM"
ORIGIN      
        1 ctactttttc caataacgcg taagaaattt aggaagttag aaccaaaggc ttaacgaaac
       61 aagccacatt taactaaata ctgcttggtg gacacacatc cgacgtggct atcgttcatt
      121 ggtctgttcc atctatggaa tgagaagcac aagattactg ctccattcca aattccgcct
      181 tcaataattt gataaaattt tgatccactc tgtttcaagc tgtcaccaga atgtcgtctt
      241 cttcttcttc tccttcttcg tcttccctta aacccattaa ttcaatttcc tgataaacga
      301 gcagagagag atctgtcaaa atcacaaacc gtgaattcgg gaagaataag ccgatgatgc
      361 ttcgtattgt tcaaatcgcg tttctatgtc tcgttctcgt cgccgggatc tcgatctcca
      421 cggcgatatc agagactgag actatatacg agatcctcct ggcaaacgga ttaccttcgg
      481 ggatattccc gaaaggtgtc agagaattca ccttcgacgt cgaaacggga cgattctcgg
      541 tttatttgaa tcaggcatgc gaggctaaat acgagactga gatacattac gacgccaata
      601 ttacggggac tataggttct gctcaaatct ctgatttgtc tggaatctcg gcgcaagagc
      661 tattcttgtg gtttccggtt aaaggaatcc gagtcgacgt gccgagttct ggtcttatat
      721 acttcgacgt tggtgttgtt cgaaagcaat attctttgtc tttgttcgag actccgagag
      781 attgcgttcc ggttcgtggg attcacaagg aactgttaga catgtgacat gaagaattat
      841 ctttagagct aggaaagatt gttccttttt agggttatgt tctccattct tgaattggtt
      901 gagatttttt tatcggtgaa gaactgttag acttgtgaaa ttgggaatat ctttcgaact
      961 aggaaagatg gttttgaaag ttttgcattg atcagattca atcatgtaat ggaaaataag
     1021 ctaatgtgtg ctcaatgggt cttcttgcag gttgagttgc cattgtaccg agtagatcaa
     1081 aatcttggga gaaacatcat ttagcaagag ttttaaagaa ttgttgtata ccataccaga
     1141 aagaaaggaa gatagatgtt ctcatcaatc aattcttgaa gatacttcaa ctgttttggt
     1201 ctcaaatctt aggcatgatt caaaatcaaa ttgcttcatt ctttccctcc ccattccagt
     1261 tttgcttctg taattcgttc tcagattagg ccggggactg aaccgaggag agaatctgtg
     1321 gttttgaaaa gatgctaaag ggatggccca gattttgttg aagtgatgat aactgtgagg
     1381 tgatgaatgt tttgtgttgt attcttgtgt catgtctaaa acagatataa taaatcctat
     1441 atttagccaa ataagtgtta tagaaaattg gcaatttgca atcatttctc tttcaccg
//
Feature
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Reference sequence information

  • RefSeq alternative splicing
    See 3 reference mRNA sequence splice variants for the AT3G07470 gene.
  • RefSeq protein product
    See the reference protein sequence for transmembrane protein, putative (Protein of unknown function, DUF538) (NP_001326338.1).

More about the AT3G07470 gene

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