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helicase with zinc finger protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 819250, updated on 18-Sep-2024

Summary

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Official Full Name
helicase with zinc finger protein
Primary source
TAIR:AT2G46420
Locus tag
AT2G46420
See related
Araport:AT2G46420
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F11C10.11
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Genomic context

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Location:
chromosome: 2
Exon count:
9
Sequence:
Chromosome: 2; NC_003071.7 (19053470..19057162)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene WRKY DNA-binding protein 46 Neighboring gene Homeodomain-like superfamily protein Neighboring gene cyclic nucleotide gated channel 3 Neighboring gene cyclic nucleotide-gated channels

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_001125064.1
NM_001337190.1
NM_130206.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
helicase with zinc finger protein
NP_001118536.1
  • Plant protein 1589 of unknown function; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP01589, plant (InterPro:IPR006476); BEST Arabidopsis thaliana protein match is: Plant protein 1589 of unknown function (TAIR:AT3G61700.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
NP_566074.1
  • Plant protein 1589 of unknown function; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP01589, plant (InterPro:IPR006476); BEST Arabidopsis thaliana protein match is: Plant protein 1589 of unknown function (TAIR:AT3G61700.1); Has 251 Blast hits to 249 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 223; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    19053470..19057162
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_130206.3 → NP_566074.1  helicase with zinc finger protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_566074.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VVR0, A0A384KXW2, A0A7G2EEH2, Q940Y4, Q9SKD8
    Conserved Domains (1) summary
    TIGR01589
    Location:52 → 108
    A_thal_3526; uncharacterized plant-specific domain TIGR01589

  2. NM_001337190.1 → NP_001323638.1  helicase with zinc finger protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VVR0, A0A384KXW2, A0A7G2EEH2, Q940Y4, Q9SKD8
    Conserved Domains (1) summary
    TIGR01589
    Location:52 → 108
    A_thal_3526; uncharacterized plant-specific domain TIGR01589

  3. NM_001125064.1 → NP_001118536.1  helicase with zinc finger protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001118536.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A7G2EEH2, B3H5Y3
    Conserved Domains (1) summary
    TIGR01589
    Location:52 → 108
    A_thal_3526; uncharacterized plant-specific domain TIGR01589
Nucleotide Protein
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