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AMMECR1 family [ Arabidopsis thaliana (thale cress) ]

Gene ID: 818453, updated on 18-Sep-2024

Summary

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Official Full Name
AMMECR1 family
Primary source
TAIR:AT2G38710
Locus tag
AT2G38710
See related
Araport:AT2G38710
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T6A23.9; T6A23_9
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Genomic context

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Location:
chromosome: 2
Exon count:
6
Sequence:
Chromosome: 2; NC_003071.7 (16184259..16187273, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Gag-Pol polyprotein/retrotransposon Neighboring gene mevalonate diphosphate decarboxylase 1 Neighboring gene microtubule-associated protein 65-5 Neighboring gene Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Protein and metabolite composition of Arabidopsis stress granules. Kosmacz M, et al. New Phytol, 2019 May. PMID 30664249
  2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_001036432.2
NM_001336722.1
NM_001336723.1
NM_129428.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in cytoplasmic stress granule IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
AMMECR1 family
NP_001031509.1
  • AMMECR1 family; INVOLVED IN: response to salt stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AMMECR1 (InterPro:IPR002733); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
NP_565894.1
  • AMMECR1 family; INVOLVED IN: response to salt stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AMMECR1 (InterPro:IPR002733); Has 1012 Blast hits to 1010 proteins in 455 species: Archae - 211; Bacteria - 342; Metazoa - 168; Fungi - 130; Plants - 53; Viruses - 0; Other Eukaryotes - 108 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    16184259..16187273 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_129428.4 → NP_565894.1  AMMECR1 family [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_565894.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9ZVJ2
    UniProtKB/TrEMBL
    A0A178VZ36, A0A384LDX3, B9DGY7
    Conserved Domains (1) summary
    pfam01871
    Location:11 → 183
    AMMECR1

  2. NM_001336723.1 → NP_001325028.1  AMMECR1 family [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9ZVJ2
    UniProtKB/TrEMBL
    A0A178VZ36, A0A384LDX3, B9DGY7
    Conserved Domains (1) summary
    pfam01871
    Location:11 → 183
    AMMECR1

  3. NM_001336722.1 → NP_001325027.1  AMMECR1 family [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9ZVJ2
    UniProtKB/TrEMBL
    A0A178VZ36, A0A384LDX3, B9DGY7
    Conserved Domains (1) summary
    pfam01871
    Location:11 → 183
    AMMECR1

  4. NM_001036432.2 → NP_001031509.1  AMMECR1 family [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001031509.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9ZVJ2
    UniProtKB/TrEMBL
    A0A178VZ36, A0A384LDX3, B9DGY7
    Conserved Domains (1) summary
    pfam01871
    Location:11 → 183
    AMMECR1
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9ZVJ2.1

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