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RPS5B ribosomal protein 5B [ Arabidopsis thaliana (thale cress) ]

Gene ID: 818304, updated on 18-Sep-2024

Summary

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Official Symbol
RPS5B
Official Full Name
ribosomal protein 5B
Primary source
TAIR:AT2G37270
Locus tag
AT2G37270
See related
Araport:AT2G37270
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ATRPS5B; F3G5.6; F3G5_6; ribosomal protein 5B
Summary
One of two genes encoding the ribosomal protein S5. Expressed at a lower level compared to ATRPS5A.
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Genomic context

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See RPS5B in Genome Data Viewer
Location:
chromosome: 2
Exon count:
5
Sequence:
Chromosome: 2; NC_003071.7 (15647677..15649471, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene adenosine kinase Neighboring gene WRKY family transcription factor family protein Neighboring gene pleiotropic drug resistance 5 Neighboring gene Ypt/Rab-GAP domain of gyp1p superfamily protein Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Regulation of Active DNA Demethylation by a Methyl-CpG-Binding Domain Protein in Arabidopsis thaliana. Li Q, et al. PLoS Genet, 2015 May. PMID 25933434, Free PMC Article
  2. Proteomic characterization of evolutionarily conserved and variable proteins of Arabidopsis cytosolic ribosomes. Chang IF, et al. Plant Physiol, 2005 Mar. PMID 15734919, Free PMC Article
  3. High heterogeneity within the ribosomal proteins of the Arabidopsis thaliana 80S ribosome. Giavalisco P, et al. Plant Mol Biol, 2005 Mar. PMID 15821981
  4. Interactomics of Qa-SNARE in Arabidopsis thaliana. Fujiwara M, et al. Plant Cell Physiol, 2014 Apr. PMID 24556609
  5. Proteomic analysis of the 26S proteasome reveals its direct interaction with transit peptides of plastid protein precursors for their degradation. Sako K, et al. J Proteome Res, 2014 Jul 3. PMID 24846764

See all (19) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001036425.2
NM_129283.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables mRNA binding HDA PubMed 
enables mRNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
involved_in translation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in chloroplast HDA PubMed 
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  
located_in cytosolic ribosome HDA PubMed 
part_of cytosolic small ribosomal subunit HDA PubMed 
located_in endoplasmic reticulum HDA PubMed 
located_in plant-type cell wall HDA PubMed 
located_in plant-type vacuole HDA PubMed 
located_in plasmodesma HDA PubMed 

General protein information

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Preferred Names
ribosomal protein 5B
NP_001031502.1
  • ribosomal protein 5B (RPS5B); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: in 7 components; EXPRESSED IN: fruit, cultured cell, pollen tube, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Ribosomal protein S7, conserved site (InterPro:IPR020606), Ribosomal protein S7, eukaryotic/archaeal (InterPro:IPR005716), Ribosomal protein S7 (InterPro:IPR000235); BEST Arabidopsis thaliana protein match is: ribosomal protein 5A (TAIR:AT3G11940.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
NP_181264.1
  • ribosomal protein 5B (RPS5B); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: in 7 components; EXPRESSED IN: fruit, cultured cell, pollen tube, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Ribosomal protein S7, conserved site (InterPro:IPR020606), Ribosomal protein S7, eukaryotic/archaeal (InterPro:IPR005716), Ribosomal protein S7 (InterPro:IPR000235); BEST Arabidopsis thaliana protein match is: ribosomal protein 5A (TAIR:AT3G11940.2); Has 8721 Blast hits to 8721 proteins in 3528 species: Archae - 243; Bacteria - 4624; Metazoa - 988; Fungi - 182; Plants - 1133; Viruses - 0; Other Eukaryotes - 1551 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    15647677..15649471 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_129283.4 → NP_181264.1  ribosomal protein 5B [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_181264.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8L967, Q9ZUT9
    UniProtKB/TrEMBL
    A0A178VNW7, A0A5S9X4R2
    Conserved Domains (1) summary
    cd14867
    Location:20 → 207
    uS7_Eukaryote; Eukaryota homolog of Ribosomal Protein S7

  2. NM_001036425.2 → NP_001031502.1  ribosomal protein 5B [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001031502.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8L967, Q9ZUT9
    UniProtKB/TrEMBL
    A0A178VNW7, A0A5S9X4R2
    Conserved Domains (1) summary
    cd14867
    Location:20 → 207
    uS7_Eukaryote; Eukaryota homolog of Ribosomal Protein S7
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9ZUT9.1

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