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RING/U-box superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 818291, updated on 18-Sep-2024

Summary

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Official Full Name
RING/U-box superfamily protein
Primary source
TAIR:AT2G37150
Locus tag
AT2G37150
See related
Araport:AT2G37150
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T2N18.9; T2N18_9
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Genomic context

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Location:
chromosome: 2
Exon count:
8
Sequence:
Chromosome: 2; NC_003071.7 (15603142..15608587, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene GRF zinc finger protein Neighboring gene Peroxidase superfamily protein Neighboring gene Terpenoid synthases superfamily protein Neighboring gene Transducin/WD40 repeat-like superfamily protein Neighboring gene microRNA ath-MIR1886 precursor Neighboring gene plasma membrane intrinsic protein 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Homeostasis of Arabidopsis R protein RPS2 is negatively regulated by the RING-type E3 ligase MUSE16. Huang Y, et al. J Exp Bot, 2023 Mar 28. PMID 36655859
  2. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
  3. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001202766.1
NM_001336627.1
NM_001336628.1
NM_001336629.1
NM_001336630.1
NM_001336631.1
NM_001336632.1
NM_001336633.1
NM_001336634.1
NM_001336637.1
NM_001336638.1
NM_179947.3
NM_201889.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables ubiquitin protein ligase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within protein autoubiquitination IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in regulation of immune response IGI
Inferred from Genetic Interaction
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
RING/U-box superfamily protein
NP_001189695.1
  • RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT4G34040.1).
NP_001318370.1
  • RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT4G34040.1); Has 8926 Blast hits to 8756 proteins in 294 species: Archae - 0; Bacteria - 12; Metazoa - 2086; Fungi - 596; Plants - 4930; Viruses - 41; Other Eukaryotes - 1261 (source: NCBI BLink).
NP_973618.1
  • RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT4G34040.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    15603142..15608587 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001336635.1 → NP_001324239.1  RING/U-box superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VRU3, A0A5S9X4Q8, A0A654F104, Q8VYL4
    Conserved Domains (3) summary
    COG5243
    Location:486 → 544
    HRD1; HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
    COG5540
    Location:430 → 539
    COG5540; RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
    cl17238
    Location:511 → 536
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

  2. NM_001336636.1 → NP_001324232.1  RING/U-box superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VRU3, A0A5S9X4Q8, A0A654F104, Q8VYL4
    Conserved Domains (3) summary
    COG5243
    Location:486 → 544
    HRD1; HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
    COG5540
    Location:430 → 539
    COG5540; RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
    cl17238
    Location:511 → 536
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

  3. NM_001336627.1 → NP_001318370.1  RING/U-box superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VRU3, A0A5S9X4Q8, A0A654F104, Q8VYL4
    Conserved Domains (3) summary
    COG5243
    Location:486 → 544
    HRD1; HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
    COG5540
    Location:430 → 539
    COG5540; RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
    cl17238
    Location:511 → 536
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

  4. NM_001336634.1 → NP_001324240.1  RING/U-box superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VRU3, A0A5S9X4Q8, A0A654F104, Q8VYL4
    Conserved Domains (3) summary
    COG5243
    Location:486 → 544
    HRD1; HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
    COG5540
    Location:430 → 539
    COG5540; RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
    cl17238
    Location:511 → 536
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

  5. NM_001336633.1 → NP_001324241.1  RING/U-box superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VRU3, A0A5S9X4Q8, A0A654F104, Q8VYL4
    Conserved Domains (3) summary
    COG5243
    Location:486 → 544
    HRD1; HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
    COG5540
    Location:430 → 539
    COG5540; RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
    cl17238
    Location:511 → 536
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

  6. NM_001336638.1 → NP_001324231.1  RING/U-box superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VRU3, A0A5S9X4Q8, A0A654F104, Q8VYL4
    Conserved Domains (3) summary
    COG5243
    Location:486 → 544
    HRD1; HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
    COG5540
    Location:430 → 539
    COG5540; RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
    cl17238
    Location:511 → 536
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

  7. NM_001336637.1 → NP_001324238.1  RING/U-box superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VRU3, A0A5S9X4Q8, A0A654F104, Q8VYL4
    Conserved Domains (3) summary
    COG5243
    Location:486 → 544
    HRD1; HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
    COG5540
    Location:430 → 539
    COG5540; RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
    cl17238
    Location:511 → 536
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

  8. NM_201889.2 → NP_973618.1  RING/U-box superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_973618.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VRU3, A0A5S9X4Q8, A0A654F104, Q8VYL4
    Conserved Domains (3) summary
    COG5243
    Location:486 → 544
    HRD1; HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
    COG5540
    Location:430 → 539
    COG5540; RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
    cl17238
    Location:511 → 536
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

  9. NM_001336628.1 → NP_001324237.1  RING/U-box superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VRU3, A0A5S9X4Q8, A0A654F104, Q8VYL4
    Conserved Domains (3) summary
    COG5243
    Location:486 → 544
    HRD1; HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
    COG5540
    Location:430 → 539
    COG5540; RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
    cl17238
    Location:511 → 536
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

  10. NM_001336629.1 → NP_001324233.1  RING/U-box superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VRU3, A0A5S9X4Q8, A0A654F104, Q8VYL4
    Conserved Domains (3) summary
    COG5243
    Location:486 → 544
    HRD1; HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
    COG5540
    Location:430 → 539
    COG5540; RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
    cl17238
    Location:511 → 536
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

  11. NM_179947.3 → NP_850278.1  RING/U-box superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_850278.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VRU3, A0A5S9X4Q8, A0A654F104, Q8VYL4
    Conserved Domains (3) summary
    COG5243
    Location:486 → 544
    HRD1; HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
    COG5540
    Location:430 → 539
    COG5540; RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
    cl17238
    Location:511 → 536
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

  12. NM_001336631.1 → NP_001324235.1  RING/U-box superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VRU3, A0A1P8AZH1, A0A5S9X4Q8, A0A654F104
    Conserved Domains (3) summary
    COG5243
    Location:502 → 560
    HRD1; HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
    COG5540
    Location:446 → 555
    COG5540; RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
    cl17238
    Location:527 → 552
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

  13. NM_001336632.1 → NP_001324234.1  RING/U-box superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VRU3, A0A1P8AZH1, A0A5S9X4Q8, A0A654F104
    Conserved Domains (3) summary
    COG5243
    Location:502 → 560
    HRD1; HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
    COG5540
    Location:446 → 555
    COG5540; RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
    cl17238
    Location:527 → 552
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

  14. NM_001336630.1 → NP_001324236.1  RING/U-box superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VRU3, A0A1P8AZH1, A0A5S9X4Q8, A0A654F104
    Conserved Domains (3) summary
    COG5243
    Location:502 → 560
    HRD1; HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
    COG5540
    Location:446 → 555
    COG5540; RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
    cl17238
    Location:527 → 552
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

  15. NM_001202766.1 → NP_001189695.1  RING/U-box superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001189695.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A7G2EG31, F4IQ07
    Conserved Domains (1) summary
    pfam13639
    Location:545 → 587
    zf-RING_2; Ring finger domain
Nucleotide Protein
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