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RING/U-box superfamily protein [Arabidopsis thaliana]

NCBI Reference Sequence: NP_001318370.1

Identical Proteins FASTA Graphics 

LOCUS       NP_001318370             546 aa            linear   PLN 20-OCT-2022
DEFINITION  RING/U-box superfamily protein [Arabidopsis thaliana].
ACCESSION   NP_001318370
VERSION     NP_001318370.1
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
DBSOURCE    REFSEQ: accession NM_001336627.1
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (residues 1 to 546)
  AUTHORS   Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D.,
            Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V.,
            Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L.,
            Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L.,
            Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H.,
            Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D.,
            Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and
            Venter,J.C.
  TITLE     Sequence and analysis of chromosome 2 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 402 (6763), 761-768 (1999)
   PUBMED   10617197
REFERENCE   2  (residues 1 to 546)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (residues 1 to 546)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (residues 1 to 546)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            The reference sequence is identical to AEC09357.
            Method: conceptual translation.
FEATURES             Location/Qualifiers
     source          1..546
                     /organism="Arabidopsis thaliana"
                     /db_xref="taxon:3702"
                     /chromosome="2"
                     /ecotype="Columbia"
     Protein         1..546
                     /product="RING/U-box superfamily protein"
                     /calculated_mol_wt=61086
     Region          <430..539
                     /region_name="COG5540"
                     /note="RING-finger-containing ubiquitin ligase
                     [Posttranslational modification, protein turnover,
                     chaperones]"
                     /db_xref="CDD:227827"
     Region          490..537
                     /region_name="RING-H2_RNF24-like"
                     /note="RING finger, H2 subclass, found in RING finger
                     proteins RNF24, RNF122, and similar proteins; cd16469"
                     /db_xref="CDD:438132"
     CDS             1..546
                     /locus_tag="AT2G37150"
                     /gene_synonym="T2N18.9; T2N18_9"
                     /coded_by="NM_001336627.1:2286..3926"
                     /inference="Similar to RNA sequence,
                     EST:INSD:EL177898.1,INSD:BX836257.1,INSD:BP671579.1,
                     INSD:BP614829.1,INSD:EL279108.1,INSD:CD532591.1,
                     INSD:EL045377.1,INSD:T46750.1,INSD:AV803641.1,
                     INSD:AV828969.1,INSD:AV816265.1,INSD:AA404788.1,
                     INSD:R84080.1"
                     /inference="similar to RNA sequence,
                     mRNA:INSD:BX819119.1,INSD:AY096670.1,INSD:AY070452.1"
                     /note="RING/U-box superfamily protein; FUNCTIONS IN: zinc
                     ion binding; EXPRESSED IN: 18 plant structures; EXPRESSED
                     DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Zinc
                     finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4
                     RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana
                     protein match is: RING/U-box superfamily protein
                     (TAIR:AT4G34040.1); Has 8926 Blast hits to 8756 proteins
                     in 294 species: Archae - 0; Bacteria - 12; Metazoa - 2086;
                     Fungi - 596; Plants - 4930; Viruses - 41; Other Eukaryotes
                     - 1261 (source: NCBI BLink)."
                     /db_xref="Araport:AT2G37150"
                     /db_xref="GeneID:818291"
                     /db_xref="TAIR:AT2G37150"
ORIGIN      
        1 mghrhflgss qffddehdqg wnhthpehpy ssqatsgtse nrshvypaen mlnegmpvss
       61 hwnsspgpna ytdsghsver phynpgvsgp shdpsvnstv ptfsapheny vtfassssyn
      121 sqtwsnasyv dhqsmesvrg aqkrkrpcps siyemgsssq yhgdrtpadt hfpselhlgk
      181 sithdhdphy mpwlmnptyr snnlsirges ssrnvrsrpt ldsetslgrn nlprslslds
      241 hsthhhsvdh ygsgqfpgqt shgnkdwnca rlspvlrdin gfspetnnfl parsvvnsls
      301 vntsgyhhhe ltgnrnptvs hgvpgtstls tsssrfshrs tstyrssshg srsghvasss
      361 gdrshlvtet ypsrhlrppp hiswrsgdrp grrrssyerf qppfdevalh erfsseefmv
      421 edrqpqyygs rnmldhhrdm rldidnmsye elldlgerig svntglsdsa isscllatmy
      481 ypsyqteeqr kcaicleeyk ekeelgevkg cghdyhgrci kkwlsmknsc pickspalpd
      541 asknss
//
Feature
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Reference sequence information

  • RefSeq mRNA
    See reference mRNA sequence for the AT2G37150 gene (NM_001336627.1).
  • RefSeq protein isoforms
    See 15 reference sequence protein isoforms for the AT2G37150 gene.

More about the AT2G37150 gene

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