LOCUS NP_001318370 546 aa linear PLN 20-OCT-2022
DEFINITION RING/U-box superfamily protein [Arabidopsis thaliana].
ACCESSION NP_001318370
VERSION NP_001318370.1
DBLINK BioProject: PRJNA116
BioSample: SAMN03081427
DBSOURCE REFSEQ: accession NM_001336627.1
KEYWORDS RefSeq.
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (residues 1 to 546)
AUTHORS Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D.,
Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V.,
Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L.,
Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L.,
Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H.,
Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D.,
Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and
Venter,J.C.
TITLE Sequence and analysis of chromosome 2 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 761-768 (1999)
PUBMED 10617197
REFERENCE 2 (residues 1 to 546)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (residues 1 to 546)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 4 (residues 1 to 546)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
The reference sequence is identical to AEC09357.
Method: conceptual translation.
FEATURES Location/Qualifiers
source 1..546
/organism="Arabidopsis thaliana"
/db_xref="taxon:3702"
/chromosome="2"
/ecotype="Columbia"
Protein 1..546
/product="RING/U-box superfamily protein"
/calculated_mol_wt=61086
Region <430..539
/region_name="COG5540"
/note="RING-finger-containing ubiquitin ligase
[Posttranslational modification, protein turnover,
chaperones]"
/db_xref="CDD:227827"
Region 490..537
/region_name="RING-H2_RNF24-like"
/note="RING finger, H2 subclass, found in RING finger
proteins RNF24, RNF122, and similar proteins; cd16469"
/db_xref="CDD:438132"
CDS 1..546
/locus_tag="AT2G37150"
/gene_synonym="T2N18.9; T2N18_9"
/coded_by="NM_001336627.1:2286..3926"
/inference="Similar to RNA sequence,
EST:INSD:EL177898.1,INSD:BX836257.1,INSD:BP671579.1,
INSD:BP614829.1,INSD:EL279108.1,INSD:CD532591.1,
INSD:EL045377.1,INSD:T46750.1,INSD:AV803641.1,
INSD:AV828969.1,INSD:AV816265.1,INSD:AA404788.1,
INSD:R84080.1"
/inference="similar to RNA sequence,
mRNA:INSD:BX819119.1,INSD:AY096670.1,INSD:AY070452.1"
/note="RING/U-box superfamily protein; FUNCTIONS IN: zinc
ion binding; EXPRESSED IN: 18 plant structures; EXPRESSED
DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Zinc
finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4
RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana
protein match is: RING/U-box superfamily protein
(TAIR:AT4G34040.1); Has 8926 Blast hits to 8756 proteins
in 294 species: Archae - 0; Bacteria - 12; Metazoa - 2086;
Fungi - 596; Plants - 4930; Viruses - 41; Other Eukaryotes
- 1261 (source: NCBI BLink)."
/db_xref="Araport:AT2G37150"
/db_xref="GeneID:818291"
/db_xref="TAIR:AT2G37150"
ORIGIN
1 mghrhflgss qffddehdqg wnhthpehpy ssqatsgtse nrshvypaen mlnegmpvss
61 hwnsspgpna ytdsghsver phynpgvsgp shdpsvnstv ptfsapheny vtfassssyn
121 sqtwsnasyv dhqsmesvrg aqkrkrpcps siyemgsssq yhgdrtpadt hfpselhlgk
181 sithdhdphy mpwlmnptyr snnlsirges ssrnvrsrpt ldsetslgrn nlprslslds
241 hsthhhsvdh ygsgqfpgqt shgnkdwnca rlspvlrdin gfspetnnfl parsvvnsls
301 vntsgyhhhe ltgnrnptvs hgvpgtstls tsssrfshrs tstyrssshg srsghvasss
361 gdrshlvtet ypsrhlrppp hiswrsgdrp grrrssyerf qppfdevalh erfsseefmv
421 edrqpqyygs rnmldhhrdm rldidnmsye elldlgerig svntglsdsa isscllatmy
481 ypsyqteeqr kcaicleeyk ekeelgevkg cghdyhgrci kkwlsmknsc pickspalpd
541 asknss
//