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CASP1 Uncharacterized protein family (UPF0497) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 818183, updated on 18-Sep-2024

Summary

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Official Symbol
CASP1
Official Full Name
Uncharacterized protein family (UPF0497)
Primary source
TAIR:AT2G36100
Locus tag
AT2G36100
See related
Araport:AT2G36100
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
Casparian strip membrane domain protein 1; F9C22.3; F9C22_3
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Genomic context

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See CASP1 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
3
Sequence:
Chromosome: 2; NC_003071.7 (15159591..15160799, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene translocase inner membrane subunit 44-2 Neighboring gene AP2/B3-like transcriptional factor family protein Neighboring gene F-box family protein Neighboring gene Polynucleotidyl transferase, ribonuclease H-like superfamily protein Neighboring gene Glycine-rich protein family

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A novel protein family mediates Casparian strip formation in the endodermis. Roppolo D, et al. Nature, 2011 May 19. PMID 21593871
  2. Functional and Evolutionary Analysis of the CASPARIAN STRIP MEMBRANE DOMAIN PROTEIN Family. Roppolo D, et al. Plant Physiol, 2014 Aug. PMID 24920445, Free PMC Article
  3. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
  4. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_129169.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables protein homodimerization activity IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell wall modification IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in cell-cell junction assembly IDA
Inferred from Direct Assay
more info
 PubMed 
Component Evidence Code Pubs
located_in Casparian strip IDA
Inferred from Direct Assay
more info
 PubMed 
located_in plasma membrane IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
Uncharacterized protein family (UPF0497)
NP_181154.1
  • Uncharacterised protein family (UPF0497); CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497, trans-membrane plant (InterPro:IPR006702), Uncharacterised protein family UPF0497, trans-membrane plant subgroup (InterPro:IPR006459); BEST Arabidopsis thaliana protein match is: Uncharacterised protein family (UPF0497) (TAIR:AT3G11550.1); Has 599 Blast hits to 599 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 599; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    15159591..15160799 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_129169.3 → NP_181154.1  Uncharacterized protein family (UPF0497) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_181154.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9SIH4
    UniProtKB/TrEMBL
    A0A178VVX3, A0A5S9X4F6
    Conserved Domains (1) summary
    pfam04535
    Location:42 → 188
    DUF588; Domain of unknown function (DUF588)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9SIH4.1

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