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CASP1 Uncharacterized protein family (UPF0497) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 818183, updated on 18-Sep-2024

Summary

Official Symbol
CASP1
Official Full Name
Uncharacterized protein family (UPF0497)
Primary source
TAIR:AT2G36100
Locus tag
AT2G36100
See related
Araport:AT2G36100
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
Casparian strip membrane domain protein 1; F9C22.3; F9C22_3
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Genomic context

See CASP1 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
3
Sequence:
Chromosome: 2; NC_003071.7 (15159591..15160799, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene translocase inner membrane subunit 44-2 Neighboring gene AP2/B3-like transcriptional factor family protein Neighboring gene F-box family protein Neighboring gene Polynucleotidyl transferase, ribonuclease H-like superfamily protein Neighboring gene Glycine-rich protein family

Interactions

General gene information

NM_129169.3

Gene Ontology Provided by TAIR

Component Evidence Code Pubs
located_in Casparian strip PubMed 
located_in plasma membrane PubMed 

General protein information

Preferred Names
Uncharacterized protein family (UPF0497)
NP_181154.1
  • Uncharacterised protein family (UPF0497); CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497, trans-membrane plant (InterPro:IPR006702), Uncharacterised protein family UPF0497, trans-membrane plant subgroup (InterPro:IPR006459); BEST Arabidopsis thaliana protein match is: Uncharacterised protein family (UPF0497) (TAIR:AT3G11550.1); Has 599 Blast hits to 599 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 599; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    15159591..15160799 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_129169.3NP_181154.1  Uncharacterized protein family (UPF0497) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_181154.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9SIH4
    UniProtKB/TrEMBL
    A0A178VVX3, A0A5S9X4F6
    Conserved Domains (1) summary
    pfam04535
    Location:42188
    DUF588; Domain of unknown function (DUF588)
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