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ATP-dependent helicase family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 817370, updated on 18-Sep-2024

Summary

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Official Full Name
ATP-dependent helicase family protein
Primary source
TAIR:AT2G28240
Locus tag
AT2G28240
See related
Araport:AT2G28240
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T3B23.9; T3B23_9
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Genomic context

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Location:
chromosome: 2
Exon count:
6
Sequence:
Chromosome: 2; NC_003071.7 (12039208..12042175)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene aspartic proteinase CDR1-like protein Neighboring gene TATA-binding related factor (TRF) of subunit 20 of Mediator complex Neighboring gene ncRNA Neighboring gene Protein kinase superfamily protein Neighboring gene ncRNA Neighboring gene cyclic nucleotide-gated channel 15

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The MOM1 complex recruits the RdDM machinery via MORC6 to establish de novo DNA methylation. Li Z, et al. bioRxiv, 2023 Jan 10. PMID 36711532, Free PMC Article
  2. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
  3. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001336152.1
NM_128384.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in heterochromatin formation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
ATP-dependent helicase family protein
NP_180391.2
  • ATP-dependent helicase family protein; BEST Arabidopsis thaliana protein match is: ATP-dependent helicase family protein (TAIR:AT1G08060.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    12039208..12042175
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_128384.4 → NP_180391.2  ATP-dependent helicase family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_180391.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VZ81, A0A7G2EBQ8, Q84JK0
    Conserved Domains (1) summary
    PHA03247
    Location:314 → 636
    PHA03247; large tegument protein UL36; Provisional

  2. NM_001336152.1 → NP_001324761.1  ATP-dependent helicase family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B130, A0A7G2EBQ8
Nucleotide Protein
Heading Accession and Version

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