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SLO1 SLOW GROWTH 1 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 816772, updated on 18-Sep-2024

Summary

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Official Symbol
SLO1
Official Full Name
SLOW GROWTH 1
Primary source
TAIR:AT2G22410
Locus tag
AT2G22410
See related
Araport:AT2G22410
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F14M13.19; F14M13_19; SLOW GROWTH 1
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Genomic context

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See SLO1 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
1
Sequence:
Chromosome: 2; NC_003071.7 (9509016..9511231)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene tRNA-Ile Neighboring gene miscRNA Neighboring gene S-adenosyl-L-methionine-dependent methyltransferases superfamily protein Neighboring gene Peroxidase superfamily protein Neighboring gene Microsomal signal peptidase 12 kDa subunit (SPC12) Neighboring gene miscRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The SLO1 PPR protein is required for RNA editing at multiple sites with similar upstream sequences in Arabidopsis mitochondria. Sung TY, et al. Plant J, 2010 Aug. PMID 20497377
  2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. results suggest that the SLO1 protein may indirectly regulate plant growth and development via affecting mitochondrial RNA editing and gene expression
    Title: The SLO1 PPR protein is required for RNA editing at multiple sites with similar upstream sequences in Arabidopsis mitochondria.
Submit: New GeneRIF Correction

General gene information

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NM_127805.3

Gene Ontology Provided by TAIR

Component Evidence Code Pubs
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
SLOW GROWTH 1
NP_179827.1
  • SLOW GROWTH 1 (SLO1); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G29760.1); Has 42589 Blast hits to 14346 proteins in 282 species: Archae - 0; Bacteria - 11; Metazoa - 210; Fungi - 265; Plants - 41374; Viruses - 0; Other Eukaryotes - 729 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    9509016..9511231
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_127805.3 → NP_179827.1  SLOW GROWTH 1 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_179827.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9SJZ3
    UniProtKB/TrEMBL
    A0A178VT52, A0A5S9X087, A0A654EV28, E3VTW6
    Conserved Domains (2) summary
    PLN03077
    Location:117 → 668
    PLN03077; Protein ECB2; Provisional
    sd00004
    Location:457 → 484
    PPR; PPR repeat [structural motif]
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9SJZ3.1

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