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Rer1 family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 816339, updated on 18-Sep-2024

Summary

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Official Full Name
Rer1 family protein
Primary source
TAIR:AT2G18240
Locus tag
AT2G18240
See related
Araport:AT2G18240
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 2
Exon count:
3
Sequence:
Chromosome: 2; NC_003071.7 (7935244..7936900)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene Noc2p family Neighboring gene pyrophosphorylase 2 Neighboring gene alpha/beta-Hydrolases superfamily protein Neighboring gene 4-phosphopantetheine adenylyltransferase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
  2. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
  3. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_127381.4
NM_179643.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in plasma membrane ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Rer1 family protein
NP_565431.1
  • Rer1 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Retrieval of early ER protein Rer1 (InterPro:IPR004932); BEST Arabidopsis thaliana protein match is: endoplasmatic reticulum retrieval protein 1B (TAIR:AT2G21600.1); Has 511 Blast hits to 511 proteins in 212 species: Archae - 0; Bacteria - 0; Metazoa - 154; Fungi - 148; Plants - 128; Viruses - 0; Other Eukaryotes - 81 (source: NCBI BLink).
NP_849974.1
  • Rer1 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Retrieval of early ER protein Rer1 (InterPro:IPR004932); BEST Arabidopsis thaliana protein match is: endoplasmatic reticulum retrieval protein 1B (TAIR:AT2G21600.1); Has 511 Blast hits to 511 proteins in 212 species: Archae - 0; Bacteria - 0; Metazoa - 154; Fungi - 148; Plants - 128; Viruses - 0; Other Eukaryotes - 81 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    7935244..7936900
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_127381.4 → NP_565431.1  Rer1 family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_565431.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    A1A6K2, Q9ZPV7
    UniProtKB/TrEMBL
    A0A178VWF8, A0A5S9WYZ2, A0A654ETV5
    Conserved Domains (1) summary
    pfam03248
    Location:21 → 181
    Rer1; Rer1 family

  2. NM_179643.1 → NP_849974.1  Rer1 family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_849974.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654ETV5
    Conserved Domains (1) summary
    pfam03248
    Location:22 → 181
    Rer1; Rer1 family
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9ZPV7.2

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