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Tetratricopeptide repeat (TPR)-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 816226, updated on 18-Sep-2024

Summary

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Official Full Name
Tetratricopeptide repeat (TPR)-like superfamily protein
Primary source
TAIR:AT2G17210
Locus tag
AT2G17210
See related
Araport:AT2G17210
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T23A1.7; T23A1_7
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Genomic context

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Location:
chromosome: 2
Exon count:
1
Sequence:
Chromosome: 2; NC_003071.7 (7485398..7487608, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene ubiquitin family protein Neighboring gene ubiquitin family protein Neighboring gene Protein kinase superfamily protein Neighboring gene EXORDIUM like 5

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. MEF46 and MEF47 are novel specificity factors for RNA editing sites in mitochondrial nad transcripts. Brehme N, et al. Mitochondrion, 2020 Jul. PMID 32439621
  2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. MEF46 and MEF47 are novel specificity factors for RNA editing sites in mitochondrial nad transcripts.
    Title: MEF46 and MEF47 are novel specificity factors for RNA editing sites in mitochondrial nad transcripts.
Submit: New GeneRIF Correction

General gene information

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Gene Ontology Provided by TAIR

Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Tetratricopeptide repeat (TPR)-like superfamily protein
NP_001318238.1
  • Tetratricopeptide repeat (TPR)-like superfamily protein; INVOLVED IN: N-terminal protein myristoylation; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G57430.1); Has 43742 Blast hits to 13561 proteins in 221 species: Archae - 0; Bacteria - 12; Metazoa - 58; Fungi - 78; Plants - 42944; Viruses - 0; Other Eukaryotes - 650 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    7485398..7487608 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001335543.1 → NP_001318238.1  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4IMG8, Q9SII7
    UniProtKB/TrEMBL
    A0A5S9WYN1, A0A654ETK9, A0A7G2EB87
    Conserved Domains (2) summary
    PLN03077
    Location:82 → 727
    PLN03077; Protein ECB2; Provisional
    sd00004
    Location:516 → 543
    PPR; PPR repeat [structural motif]
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9SII7.2

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