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LOC8079943 F-box/kelch-repeat protein At1g30090 [ Sorghum bicolor (sorghum) ]

Gene ID: 8079943, updated on 22-Oct-2023

Summary

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Gene symbol
LOC8079943
Gene description
F-box/kelch-repeat protein At1g30090
Locus tag
SORBI_3002G036400
Gene type
protein coding
RefSeq status
MODEL
Organism
Sorghum bicolor
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Genomic context

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See LOC8079943 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
2
Annotation release Status Assembly Chr Location
101 current Sorghum_bicolor_NCBIv3 (GCF_000003195.3) 2 NC_012871.2 (3429609..3432182, complement)

Chromosome 2 - NC_012871.2Genomic Context describing neighboring genes Neighboring gene protein TIFY 5 Neighboring gene uncharacterized LOC110432566 Neighboring gene uncharacterized LOC8079942 Neighboring gene uncharacterized LOC8080489 Neighboring gene zinc finger protein GIS3

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012871.2 Chromosome 2 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
F-box/kelch-repeat protein At1g30090

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sorghum bicolor Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sorghum_bicolor_NCBIv3 Primary Assembly

Genomic

  1. NC_012871.2 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

    Range
    3429609..3432182 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021453286.1 → XP_021308961.1  F-box/kelch-repeat protein At1g30090

    UniProtKB/TrEMBL
    A0A921RKZ1, C5X9L1
    Conserved Domains (3) summary
    PHA03098
    Location:172 → 363
    PHA03098; kelch-like protein; Provisional
    sd00038
    Location:151 → 201
    Kelch; KELCH repeat [structural motif]
    pfam00646
    Location:56 → 99
    F-box; F-box domain

  2. XM_002461425.2 → XP_002461470.1  F-box/kelch-repeat protein At1g30090

    See identical proteins and their annotated locations for XP_002461470.1

    UniProtKB/TrEMBL
    A0A921RKZ1, C5X9L1
    Conserved Domains (3) summary
    PHA03098
    Location:172 → 363
    PHA03098; kelch-like protein; Provisional
    sd00038
    Location:151 → 201
    Kelch; KELCH repeat [structural motif]
    pfam00646
    Location:56 → 99
    F-box; F-box domain
Nucleotide Protein
Heading Accession and Version

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