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LOC7454392 indole-3-acetic acid-amido synthetase GH3.6 [ Populus trichocarpa (black cottonwood) ]

Gene ID: 7454392, updated on 23-Nov-2023

Summary

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Gene symbol
LOC7454392
Gene description
indole-3-acetic acid-amido synthetase GH3.6
Locus tag
POPTR_011G129700v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Populus trichocarpa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Genomic context

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See LOC7454392 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
3
Annotation release Status Assembly Chr Location
102 current P.trichocarpa_v4.1 (GCF_000002775.5) 11 NC_037295.2 (16360006..16362514)
101 previous assembly Pop_tri_v3 (GCF_000002775.4) 11 NC_037295.1 (15519851..15522388)

Chromosome 11 - NC_037295.2Genomic Context describing neighboring genes Neighboring gene probable NAD(P)H dehydrogenase (quinone) FQR1-like 1 Neighboring gene transcription factor bHLH123 Neighboring gene disease resistance RPP13-like protein 4 Neighboring gene uncharacterized LOC7454393

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables indole-3-acetic acid amido synthetase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
indole-3-acetic acid-amido synthetase GH3.6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Populus trichocarpa Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.trichocarpa_v4.1 Primary Assembly

Genomic

  1. NC_037295.2 Reference P.trichocarpa_v4.1 Primary Assembly

    Range
    16360006..16362514
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002316918.4 → XP_002316954.1  indole-3-acetic acid-amido synthetase GH3.6

    See identical proteins and their annotated locations for XP_002316954.1

    UniProtKB/TrEMBL
    A0A2K2CBP7, B9I058
    Conserved Domains (1) summary
    PLN02620
    Location:1 → 611
    PLN02620; indole-3-acetic acid-amido synthetase
Nucleotide Protein
Heading Accession and Version

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