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2610008E11Rik RIKEN cDNA 2610008E11 gene [ Mus musculus (house mouse) ]

Gene ID: 72128, updated on 27-Nov-2024

Summary

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Official Symbol
2610008E11Rikprovided by MGI
Official Full Name
RIKEN cDNA 2610008E11 geneprovided by MGI
Primary source
MGI:MGI:1919378
See related
Ensembl:ENSMUSG00000060301 AllianceGenome:MGI:1919378
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. [provided by Alliance of Genome Resources, Nov 2024]
Expression
Broad expression in CNS E14 (RPKM 8.4), CNS E18 (RPKM 8.0) and 19 other tissues See more
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Genomic context

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See 2610008E11Rik in Genome Data Viewer
Location:
10 C1; 10 39.72 cM
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 10 NC_000076.7 (78900208..78933434, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 10 NC_000076.6 (79064374..79097600, complement)

Chromosome 10 - NC_000076.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_27238 Neighboring gene olfactory receptor family 7 subfamily A member 35 Neighboring gene STARR-seq mESC enhancer starr_27239 Neighboring gene predicted gene, 40712 Neighboring gene olfactory receptor family 7 subfamily A member 41 Neighboring gene STARR-positive B cell enhancer ABC_E3895 Neighboring gene vomeronasal 2, receptor 80 Neighboring gene STARR-seq mESC enhancer starr_27242 Neighboring gene STARR-seq mESC enhancer starr_27243 Neighboring gene vomeronasal 2, receptor 81

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. BayGenomics: a resource of insertional mutations in mouse embryonic stem cells. Stryke D, et al. Nucleic Acids Res, 2003 Jan 1. PMID 12520002, Free PMC Article
  2. Genetic determinants of micronucleus formation in vivo. Adams DJ, et al. Nature, 2024 Mar. PMID 38355793, Free PMC Article
  3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

See all (11) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

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Homology

Clone Names

  • MGC90797

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
Inferred from Biological aspect of Ancestor
more info
  
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
uncharacterized protein LOC72128

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001004362.2 → NP_001004362.2  uncharacterized protein LOC72128 isoform 1

    See identical proteins and their annotated locations for NP_001004362.2

    Status: VALIDATED

    Source sequence(s)
    AC104097, AK148309
    Consensus CDS
    CCDS35965.1
    UniProtKB/TrEMBL
    G3X964
    Related
    ENSMUSP00000044020.7, ENSMUST00000039271.7
    Conserved Domains (5) summary
    smart00349
    Location:10 → 69
    KRAB; krueppel associated box
    COG5048
    Location:299 → 644
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:529 → 549
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:10 → 49
    KRAB; KRAB box
    pfam13465
    Location:569 → 592
    zf-H2C2_2; Zinc-finger double domain

  2. NM_001359715.1 → NP_001346644.1  uncharacterized protein LOC72128 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AK148309, BC082302, BU703831
    Conserved Domains (3) summary
    smart00349
    Location:10 → 69
    KRAB; krueppel associated box
    COG5048
    Location:271 → 616
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:501 → 521
    ZF_C2H2; C2H2 Zn finger [structural motif]

  3. NM_001359717.1 → NP_001346646.1  uncharacterized protein LOC72128 isoform 3

    Status: VALIDATED

    Source sequence(s)
    AK148309, BC082302, CN526042
    Conserved Domains (2) summary
    COG5048
    Location:135 → 480
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:365 → 385
    ZF_C2H2; C2H2 Zn finger [structural motif]

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000076.7 Reference GRCm39 C57BL/6J

    Range
    78900208..78933434 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017314115.1 → XP_017169604.1  uncharacterized protein LOC72128 isoform X1

    Conserved Domains (2) summary
    COG5048
    Location:135 → 480
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:365 → 385
    ZF_C2H2; C2H2 Zn finger [structural motif]
Nucleotide Protein Strain
Heading Accession and Version

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