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ATG2B autophagy related 2B [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 712467, updated on 17-Aug-2024

Summary

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Official Symbol
ATG2Bprovided by VGNC
Official Full Name
autophagy related 2Bprovided by VGNC
Primary source
VGNC:VGNC:84310
See related
Ensembl:ENSMMUG00000003658
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See ATG2B in Genome Data Viewer
Location:
chromosome: 7
Exon count:
43
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 7 NC_041760.1 (158470292..158553870, complement)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 7 NC_027899.1 (158559511..158641662, complement)

Chromosome 7 - NC_041760.1Genomic Context describing neighboring genes Neighboring gene bradykinin receptor B2 Neighboring gene bradykinin receptor B1 Neighboring gene small nucleolar RNA U13 Neighboring gene U2 spliceosomal RNA Neighboring gene GSK3B interacting protein Neighboring gene phosphatidylethanolamine-binding protein 1 pseudogene Neighboring gene adenylate kinase 7

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phosphatidylinositol-3-phosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in autophagosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in autophagy of mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in piecemeal microautophagy of the nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in reticulophagy IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extrinsic component of membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in phagophore assembly site IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
autophagy-related protein 2 homolog B
Names
ATG2 autophagy related 2 homolog B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041760.1 Reference Mmul_10 Primary Assembly

    Range
    158470292..158553870 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001101467.4 → XP_001101467.2  autophagy-related protein 2 homolog B isoform X1

    See identical proteins and their annotated locations for XP_001101467.2

    UniProtKB/TrEMBL
    F6PWS2, H9ZAM9
    Related
    ENSMMUP00000004879.4, ENSMMUT00000005180.4
    Conserved Domains (3) summary
    pfam09333
    Location:1980 → 2074
    ATG_C; Autophagy-related protein C terminal domain
    pfam12624
    Location:11 → 116
    Chorein_N; N-terminal region of Chorein or VPS13
    pfam13329
    Location:1240 → 1372
    ATG2_CAD; Autophagy-related protein 2 CAD motif

  2. XM_015144460.2 → XP_014999946.1  autophagy-related protein 2 homolog B isoform X2

    UniProtKB/TrEMBL
    H9ZAM9
    Conserved Domains (3) summary
    pfam09333
    Location:1979 → 2073
    ATG_C; Autophagy-related protein C terminal domain
    pfam12624
    Location:11 → 116
    Chorein_N; N-terminal region of Chorein or VPS13
    pfam13329
    Location:1239 → 1371
    ATG2_CAD; Autophagy-related protein 2 CAD motif

  3. XM_015144461.2 → XP_014999947.1  autophagy-related protein 2 homolog B isoform X3

    UniProtKB/TrEMBL
    F6PWT8, H9ZAM9
    Related
    ENSMMUP00000004877.4, ENSMMUT00000005178.4
    Conserved Domains (3) summary
    pfam09333
    Location:1980 → 2004
    ATG_C; Autophagy-related protein C terminal domain
    pfam12624
    Location:11 → 116
    Chorein_N; N-terminal region of Chorein or VPS13
    pfam13329
    Location:1240 → 1372
    ATG2_CAD; Autophagy-related protein 2 CAD motif

RNA

  1. XR_001446441.2 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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