U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SYCP1 synaptonemal complex protein 1 [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 709189, updated on 17-Aug-2024

Summary

Go to the top of the page Help
Official Symbol
SYCP1provided by VGNC
Official Full Name
synaptonemal complex protein 1provided by VGNC
Primary source
VGNC:VGNC:78062
See related
Ensembl:ENSMMUG00000017674
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See SYCP1 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
36
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 1 NC_041754.1 (109251925..109364026, complement)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 1 NC_027893.1 (115898576..116010442)

Chromosome 1 - NC_041754.1Genomic Context describing neighboring genes Neighboring gene prohibitin pseudogene Neighboring gene thyroid stimulating hormone subunit beta Neighboring gene suppressor of IKBKE 1 Neighboring gene cold shock domain containing E1 Neighboring gene NRAS proto-oncogene, GTPase

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables double-stranded DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chiasma assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lateral element assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in meiotic DNA repair synthesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in synaptonemal complex assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in central element IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in male germ cell nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in synaptonemal complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in transverse filament IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
synaptonemal complex protein 1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041754.1 Reference Mmul_10 Primary Assembly

    Range
    109251925..109364026 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028830126.1 → XP_028685959.1  synaptonemal complex protein 1 isoform X1

    UniProtKB/TrEMBL
    F6UAT5, G7MIK4
    Conserved Domains (1) summary
    pfam05483
    Location:28 → 792
    SCP-1; Synaptonemal complex protein 1 (SCP-1)

  2. XM_028830135.1 → XP_028685968.1  synaptonemal complex protein 1 isoform X1

    UniProtKB/TrEMBL
    F6UAT5, G7MIK4
    Conserved Domains (1) summary
    pfam05483
    Location:28 → 792
    SCP-1; Synaptonemal complex protein 1 (SCP-1)

  3. XM_015148842.2 → XP_015004328.2  synaptonemal complex protein 1 isoform X2

    UniProtKB/TrEMBL
    G7MIK4
    Conserved Domains (1) summary
    pfam05483
    Location:28 → 757
    SCP-1; Synaptonemal complex protein 1 (SCP-1)

  4. XM_015148831.2 → XP_015004317.2  synaptonemal complex protein 1 isoform X1

    UniProtKB/TrEMBL
    F6UAT5, G7MIK4
    Related
    ENSMMUP00000023258.4, ENSMMUT00000024850.4
    Conserved Domains (1) summary
    pfam05483
    Location:28 → 792
    SCP-1; Synaptonemal complex protein 1 (SCP-1)

  5. XM_015148835.2 → XP_015004321.2  synaptonemal complex protein 1 isoform X1

    UniProtKB/TrEMBL
    F6UAT5, G7MIK4
    Conserved Domains (1) summary
    pfam05483
    Location:28 → 792
    SCP-1; Synaptonemal complex protein 1 (SCP-1)

  6. XM_015148851.2 → XP_015004337.2  synaptonemal complex protein 1 isoform X3

    UniProtKB/TrEMBL
    G7MIK4
    Conserved Domains (1) summary
    pfam05483
    Location:1 → 741
    SCP-1; Synaptonemal complex protein 1 (SCP-1)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.