|
Name |
Accession |
Description |
Interval |
E-value |
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
28-792 |
0e+00 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 1037.37 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 28 LGGDSTFFKSFNKCTEDDFEFPFAMTNLSKNGENIDSDPALQKVNFLPMLEQVGNS-DCHYQEGLKDSDLENSEALSRVY 106
Cdd:pfam05483 1 AGGDSNFFKSFNKCTEDDFEFPFAKSNLSKNGENIDSDPAFQKLNFLPMLEQVANSgDCHYQEGLKDSDFENSEGLSRLY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 107 SKLYKEAEKIKKWKVSIEAELKQKENKLQENRKIIEAQRKAIQELQFGNEKVSLKLEEGIQENKDLIKENNATRHLCNLL 186
Cdd:pfam05483 81 SKLYKEAEKIKKWKVSIEAELKQKENKLQENRKIIEAQRKAIQELQFENEKVSLKLEEEIQENKDLIKENNATRHLCNLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 187 KETCARSAEKTKKYEYEREETRQVYMDLNNNIEKMVTAFEELRVQAENSRLEMHFKLKEDYEKIQHLEQEYKKEVNDKEK 266
Cdd:pfam05483 161 KETCARSAEKTKKYEYEREETRQVYMDLNNNIEKMILAFEELRVQAENARLEMHFKLKEDHEKIQHLEEEYKKEINDKEK 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 267 QVSLLLIQISEKENKMKDLTFLLEESRDKVNQLEEKTKLQSENLKQSIEKQHHLTKELEDIKVSLQRSVSTQKALEEDLQ 346
Cdd:pfam05483 241 QVSLLLIQITEKENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELIEKKDHLTKELEDIKMSLQRSMSTQKALEEDLQ 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 347 IATKTICQLTEEKEAQMEAFNKARAAHSFVVTEFETTICSLKELLRTEQQRLEKSEDQLKILTMELQKKSSELEEMTKLT 426
Cdd:pfam05483 321 IATKTICQLTEEKEAQMEELNKAKAAHSFVVTEFEATTCSLEELLRTEQQRLEKNEDQLKIITMELQKKSSELEEMTKFK 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 427 NNKEVELEELKKVLGEKEKLLYENKQFEKIAEELKGTEQELIGLLQAREKEVHDLEIQLTAITTSEQYYSKEVKDLKTEL 506
Cdd:pfam05483 401 NNKEVELEELKKILAEDEKLLDEKKQFEKIAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTEL 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 507 ENEKLKNIELTSHCNKLSLENKELTQETSDMTLELKNQQEDINNNKKREERMLKQIENLEETETQLRNELEYVREELKQK 586
Cdd:pfam05483 481 EKEKLKNIELTAHCDKLLLENKELTQEASDMTLELKKHQEDIINCKKQEERMLKQIENLEEKEMNLRDELESVREEFIQK 560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 587 RDEVKCKLDKSEEN---------------------CNNLRKQVENKNKYIEELQQENKALKKKGTAESKQLNVYEIKVNK 645
Cdd:pfam05483 561 GDEVKCKLDKSEENarsieyevlkkekqmkilenkCNNLKKQIENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNK 640
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 646 LELELESAKQKFGEITDTYQKEIEDKKISEENLLEEVEKAKVIADEAVKLQKEIDKRCQHKIAEMVALMEKHKDQYDKII 725
Cdd:pfam05483 641 LELELASAKQKFEEIIDNYQKEIEDKKISEEKLLEEVEKAKAIADEAVKLQKEIDKRCQHKIAEMVALMEKHKHQYDKII 720
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1622830651 726 EERDSELGLYKSKEQEQSSLRASLETELSNLKTELLSVKKQLEIEREEKEKLKREAKENTATLKEKK 792
Cdd:pfam05483 721 EERDSELGLYKNKEQEQSSAKAALEIELSNIKAELLSLKKQLEIEKEEKEKLKMEAKENTAILKDKK 787
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
195-717 |
1.90e-13 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 74.77 E-value: 1.90e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 195 EKTKKYEYEREETRQVYMDLNNNIEKMVTAFEELRVQAENSRLEMHFKLKEDY--EKIQHLEQEYKKEVNDKEKQVSL-- 270
Cdd:pfam15921 335 EAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHkrEKELSLEKEQNKRLWDRDTGNSIti 414
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 271 --LLIQISEKENKMKDLTFLLEESRDKVNQLEEKTKLQSENLKQSIEKQHHLTKELEDIKVSLQRSVSTQKALEEDLQIA 348
Cdd:pfam15921 415 dhLRRELDDRNMEVQRLEALLKAMKSECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESS 494
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 349 TKTICQLT---EEKEAQMEAFNKAraahsfvVTEFETTIcslkELLRTEQQRLEKSEDQLKiltmelqkksseleemtkl 425
Cdd:pfam15921 495 ERTVSDLTaslQEKERAIEATNAE-------ITKLRSRV----DLKLQELQHLKNEGDHLR------------------- 544
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 426 tnNKEVELEELKKVLGEKEKLLYENKQFEKIAEELKGTEQELIGLLQAR----EKEVHDLEIQLTAITTSEQYYSKEVKD 501
Cdd:pfam15921 545 --NVQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEkaqlEKEINDRRLELQEFKILKDKKDAKIRE 622
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 502 LKTELENEKLKNIELTSHCNKLSLENKELTQETSDMTLELKNQQEDINNNKKREERMLKQIEN----LEETETQLRNELE 577
Cdd:pfam15921 623 LEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNkseeMETTTNKLKMQLK 702
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 578 YVREELKQKRDEVKcKLDKSEENCNN----LRKQVENKNKYIEELQQENKALKKKGTAESKQLNVYEIKVNKLELELESA 653
Cdd:pfam15921 703 SAQSELEQTRNTLK-SMEGSDGHAMKvamgMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTV 781
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1622830651 654 KQKFGEITDtyqkEIEDKKISEENLLEEVEKAKVIADEAVKLQKEIDKRCQHKIAEMVALMEKH 717
Cdd:pfam15921 782 ATEKNKMAG----ELEVLRSQERRLKEKVANMEVALDKASLQFAECQDIIQRQEQESVRLKLQH 841
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
123-791 |
2.16e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 74.71 E-value: 2.16e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 123 IEAELKQKENKLQENRKIIE---AQRKAIQELQFGNEKVSLK-LEEGIQENKDLIKENNATRHLCNLLKETCARSAEKTK 198
Cdd:TIGR02168 194 ILNELERQLKSLERQAEKAErykELKAELRELELALLVLRLEeLREELEELQEELKEAEEELEELTAELQELEEKLEELR 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 199 KYEYEREETRQVYMDLNNNIEKMVTAFEELRVQAENSRLEMHFKLKEDYEKIQHLEQ---EYKKEVNDKEKQVSLLLIQI 275
Cdd:TIGR02168 274 LEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESkldELAEELAELEEKLEELKEEL 353
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 276 SEKENKMKDLTFLLEESRDKVNQLEEKTKLQSENLKQSIEKQHHLTKELEDIKVSLQRSVSTQKALEEDLQIatkticQL 355
Cdd:TIGR02168 354 ESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEE------LL 427
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 356 TEEKEAQMEAFNKARAAHSFVVTEFETTICSLKELLRTEQQRLEKSEDQLKILTMELQKKSSELEEMTKLTNNKEVELEE 435
Cdd:TIGR02168 428 KKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEG 507
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 436 LKKVLGEKEKL--------------------------------LYENKQ-----FEKIAEELKGTEQELI-GLLQAREKE 477
Cdd:TIGR02168 508 VKALLKNQSGLsgilgvlselisvdegyeaaieaalggrlqavVVENLNaakkaIAFLKQNELGRVTFLPlDSIKGTEIQ 587
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 478 VHDLEIQLT-----AITTSEQYYSKE--------------VKDLKTELENEKLKNIE----------------LTSHCNK 522
Cdd:TIGR02168 588 GNDREILKNiegflGVAKDLVKFDPKlrkalsyllggvlvVDDLDNALELAKKLRPGyrivtldgdlvrpggvITGGSAK 667
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 523 LSLENKELTQETSDMTLELKNQQEDINNNKKREERMLKQIENLEETETQLRNELeyvrEELKQKRDEVKCKLDKSEENCN 602
Cdd:TIGR02168 668 TNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKEL----EELSRQISALRKDLARLEAEVE 743
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 603 NLRKQVENKNKYIEELQQENKALKKKGTAESKQLNVYEIKVNKLELELESAKQKFGEITDTYQKEIEDKKISEENLLEEV 682
Cdd:TIGR02168 744 QLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLR 823
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 683 EKAKVIADEAVKLQKEID------KRCQHKIAEMVALMEKHKDQYDKIIEERDSELGLYKSKEQEQSSLRA--------- 747
Cdd:TIGR02168 824 ERLESLERRIAATERRLEdleeqiEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSeleelseel 903
|
730 740 750 760
....*....|....*....|....*....|....*....|....*
gi 1622830651 748 -SLETELSNLKTELLSVKKQLEIEREEKEKLKREAKENTATLKEK 791
Cdd:TIGR02168 904 rELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEE 948
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
242-782 |
3.39e-13 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 73.94 E-value: 3.39e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 242 KLKEDYEKIQHLEQEYKKEVNDKEKQVSLLLIQISEKENKMKDLTFLLEESRDKVNQLEEkTKLQSENLKQSIEKQHHLT 321
Cdd:PRK03918 176 RRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEE-LKEEIEELEKELESLEGSK 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 322 KELEDIKVSLQRSVSTQKALEEDLQIATKTICQLtEEKEAQMEAFNKARAAHSFVVTEFETTICSLKELLRTEQQRLEks 401
Cdd:PRK03918 255 RKLEEKIRELEERIEELKKEIEELEEKVKELKEL-KEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIK-- 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 402 edqlkiltmELQKKSSELEEMTKLTNNKEVELEELKKVLGEKEKLLYENKQFEKIAEELKG-TEQELIGLLQAREKEVHD 480
Cdd:PRK03918 332 ---------ELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGlTPEKLEKELEELEKAKEE 402
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 481 LEIQLTAITTSEQYYSKEVKDLKT-----------------ELENEKLKNI--ELTSHCNKLSLENKELTQETSDMTLEL 541
Cdd:PRK03918 403 IEEEISKITARIGELKKEIKELKKaieelkkakgkcpvcgrELTEEHRKELleEYTAELKRIEKELKEIEEKERKLRKEL 482
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 542 KNQQEDINNNKK--REERMLKQIENLEETETqlrnelEYVREELKQKRDEvkckLDKSEENCNNLRKQVENKNKYIEELQ 619
Cdd:PRK03918 483 RELEKVLKKESEliKLKELAEQLKELEEKLK------KYNLEELEKKAEE----YEKLKEKLIKLKGEIKSLKKELEKLE 552
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 620 QENKAL----KKKGTAESKQLNVYEIKVNKLELELESAKQKFGEITDTYQKEIEDKKISEE--NLLEEVEKAKVIADEAV 693
Cdd:PRK03918 553 ELKKKLaeleKKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKEleREEKELKKLEEELDKAF 632
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 694 KLQKEIDKRCQHKIAEMVALMEKHKDQYDKIIEERdselglYKSKEQEQSSLRASLEtELSNLKTELLSVKKQLEIEREE 773
Cdd:PRK03918 633 EELAETEKRLEELRKELEELEKKYSEEEYEELREE------YLELSRELAGLRAELE-ELEKRREEIKKTLEKLKEELEE 705
|
....*....
gi 1622830651 774 KEKLKREAK 782
Cdd:PRK03918 706 REKAKKELE 714
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
186-585 |
4.05e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 73.94 E-value: 4.05e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 186 LKETCARSAEKTKKYEYEREETRQVYMDLNNNIEKMVTAFEELRVQAENsrlemhfkLKEDYEKIQHLEQEYKKEVNDKE 265
Cdd:TIGR02168 682 LEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISA--------LRKDLARLEAEVEQLEERIAQLS 753
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 266 KQVSLLLIQISEKENKMKDLTFLLEESRDKVNQLEEKTKLQSENLKQSIEKQHHLTKELEDIKVSLQRSVSTQKALEEDL 345
Cdd:TIGR02168 754 KELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRI 833
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 346 QIATKTICQLTEEKEAQMEafnkaraahsfvvtefetTICSLKELLRTEQQRLEKSEDQLKILTMELQKKSSELEEMTKL 425
Cdd:TIGR02168 834 AATERRLEDLEEQIEELSE------------------DIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSE 895
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 426 TNNKEVELEELKKVLGEKEKLLYE-NKQFEKIAEELKGTEQELIGLL-QAREKEVHDLEIQLT---AITTSEQYYSKEVK 500
Cdd:TIGR02168 896 LEELSEELRELESKRSELRRELEElREKLAQLELRLEGLEVRIDNLQeRLSEEYSLTLEEAEAlenKIEDDEEEARRRLK 975
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 501 DLKTELENekLKNIeltshcNKLSLENKELTQETSDmtlELKNQQEDINNNKKREERMLKQIEnlEETETQLRNELEYVR 580
Cdd:TIGR02168 976 RLENKIKE--LGPV------NLAAIEEYEELKERYD---FLTAQKEDLTEAKETLEEAIEEID--REARERFKDTFDQVN 1042
|
....*
gi 1622830651 581 EELKQ 585
Cdd:TIGR02168 1043 ENFQR 1047
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
98-684 |
1.47e-12 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 72.02 E-value: 1.47e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 98 NSEALSRVYSKLYKEAEKIKKWKVSIEAELKQKEN---KLQENRKIIEAQRKAIQELQFGNEKVSLKLEEGIQENKDLIK 174
Cdd:PRK03918 156 GLDDYENAYKNLGEVIKEIKRRIERLEKFIKRTENieeLIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEE 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 175 ennatrhlcnlLKETCARSAEKTKKYEYEREETRQVYMDLNNNIEKMVTAFEELRVQAEnsRLEMHFKLKEDYEKIQHLE 254
Cdd:PRK03918 236 -----------LKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVK--ELKELKEKAEEYIKLSEFY 302
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 255 QEYKKEVNDKEKQVSLL----------LIQISEKENKMKDLTFLLEESRDKVNQLEEKTKLQSENLKQSIEKQHHLTK-- 322
Cdd:PRK03918 303 EEYLDELREIEKRLSRLeeeingieerIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRlt 382
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 323 --ELEDIKVSLQRSVSTQKALEEDLQIATKTICQLTEEKEAQMEAFNKARAAHSFVVT--------EFETTICSLKELLR 392
Cdd:PRK03918 383 glTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVcgrelteeHRKELLEEYTAELK 462
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 393 TEQQRLEKSEDQLKILTMELQKKSSELEEMTKLTNNKEV--ELEELKKVLGE--KEKLLYENKQFEKIAEELKGTEQELI 468
Cdd:PRK03918 463 RIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELaeQLKELEEKLKKynLEELEKKAEEYEKLKEKLIKLKGEIK 542
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 469 GLLQaREKEVHDLEIQLTAITTSEQYYSKEVKDLKTELENEKLKNIEltshcnKLSLENKELtQETSDMTLELKNQqedi 548
Cdd:PRK03918 543 SLKK-ELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVE------ELEERLKEL-EPFYNEYLELKDA---- 610
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 549 nnnKKREERMLKQIENLEETETQLRNELEYVREELKQKRDEVKCKLDK-SEENCNNLRKQVENKNKYIEELQQENKALKK 627
Cdd:PRK03918 611 ---EKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKySEEEYEELREEYLELSRELAGLRAELEELEK 687
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 628 KGTAESKQLNVYEIKVNKLE---LELESAKQKFGEITDTYQKEIEDKKISEENLLEEVEK 684
Cdd:PRK03918 688 RREEIKKTLEKLKEELEEREkakKELEKLEKALERVEELREKVKKYKALLKERALSKVGE 747
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
106-687 |
1.62e-12 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 71.63 E-value: 1.62e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 106 YSKLYKEAEKIKKWKVSIEAELKQKENKLQENRKIIEAQRKAIQELQFGNEKVSLKLEEGIQENKDLIKENNATRHLCNL 185
Cdd:PRK03918 181 LEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEK 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 186 LKETCARSAEKTKKYEYEREETRQVymdlnNNIEKMVTAFEELRvqaensrlEMHFKLKEDYEKIQHLEQEYKKEVNDKE 265
Cdd:PRK03918 261 IRELEERIEELKKEIEELEEKVKEL-----KELKEKAEEYIKLS--------EFYEEYLDELREIEKRLSRLEEEINGIE 327
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 266 KQVSllliQISEKENKMKDLTFLLEESRDKVNQLEEKTKLQSENLKQSIEKQHHLTK----ELEDIKVSLQRSVSTQKAL 341
Cdd:PRK03918 328 ERIK----ELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRltglTPEKLEKELEELEKAKEEI 403
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 342 EEDLQIATKTICQLTEEKEAQMEAFNKARAAHSFVVT--------EFETTICSLKELLRTEQQRLEKSEDQLKILTMELQ 413
Cdd:PRK03918 404 EEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVcgrelteeHRKELLEEYTAELKRIEKELKEIEEKERKLRKELR 483
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 414 KKSSELEEMTKLTNNKEV--ELEELKKVLGE--KEKLLYENKQFEKIAEELKGTEQELIGLLQaREKEVHDLEIQLTAIT 489
Cdd:PRK03918 484 ELEKVLKKESELIKLKELaeQLKELEEKLKKynLEELEKKAEEYEKLKEKLIKLKGEIKSLKK-ELEKLEELKKKLAELE 562
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 490 TSEQYYSKEVKDLKTELENEKLKNI--------ELTSHCNK-LSLEN-----KELTQETSDMTLELKNQQEDINNNKKRE 555
Cdd:PRK03918 563 KKLDELEEELAELLKELEELGFESVeeleerlkELEPFYNEyLELKDaekelEREEKELKKLEEELDKAFEELAETEKRL 642
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 556 ERMLKQIENL-----EETETQLRNELEYVREELKQKRDEVKC---KLDKSEENCNNLRKQVENKNKYIEELQQENKALKK 627
Cdd:PRK03918 643 EELRKELEELekkysEEEYEELREEYLELSRELAGLRAELEElekRREEIKKTLEKLKEELEEREKAKKELEKLEKALER 722
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1622830651 628 kgtaeskqLNVYEIKVNKLELEL-ESAKQKFGEITDTYQKEIEDKKISEENLLEEVEKAKV 687
Cdd:PRK03918 723 --------VEELREKVKKYKALLkERALSKVGEIASEIFEELTEGKYSGVRVKAEENKVKL 775
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
89-768 |
2.39e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 71.24 E-value: 2.39e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 89 EGLKDSDLENSEALSRVYSKLY---KEAEKIKKWKVSIEAELKQKENKLQENRKIIEAQRKAIQELQFGNEKVSLKLEEg 165
Cdd:TIGR02168 270 EELRLEVSELEEEIEELQKELYalaNEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEE- 348
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 166 IQENKDLIKENNATRHlcNLLKETCARSAEKTKKYEYEREETRQVYMD---LNNNIEKMVTAFEEL-----RVQAENSRL 237
Cdd:TIGR02168 349 LKEELESLEAELEELE--AELEELESRLEELEEQLETLRSKVAQLELQiasLNNEIERLEARLERLedrreRLQQEIEEL 426
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 238 EMHF------KLKEDYEKIQHLEQEYKKEVNDKEKQVSLLLIQISEKENKMKDLTFLLEESRDKVNQLEeKTKLQSENLK 311
Cdd:TIGR02168 427 LKKLeeaelkELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLE-RLQENLEGFS 505
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 312 QSIEKQHHLTKELEDIKVSLQRSVSTQKALEEDLQIATKTICQ--LTEEKEAQMEAFNKARAAHSFVVTEFETTICSLKE 389
Cdd:TIGR02168 506 EGVKALLKNQSGLSGILGVLSELISVDEGYEAAIEAALGGRLQavVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTE 585
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 390 LLRTEQQRLEKSEDQLKILTmELQKKSSELEEM-------TKLTNNKEVELEELKKVLGE------------------KE 444
Cdd:TIGR02168 586 IQGNDREILKNIEGFLGVAK-DLVKFDPKLRKAlsyllggVLVVDDLDNALELAKKLRPGyrivtldgdlvrpggvitGG 664
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 445 KLLYENKQFEKIAE--ELKGTEQELIGLLQAREKEVHDLEIQLTAITTSEQYYSKEVKDLKTELENEKLKNIELTSHCNK 522
Cdd:TIGR02168 665 SAKTNSSILERRREieELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQ 744
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 523 LSLENKELTQETSDMTLELKNQQEDINNNKKREERMLKQIENLEETETQLRNELEYVREELKQKRDEV---KCKLDKSEE 599
Cdd:TIGR02168 745 LEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELtllNEEAANLRE 824
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 600 NCNNLRKQVENKNKYIEELQQENKALKKKGTAESKQLNVYEIKVNKLELELESAkqkfgeiTDTYQKEIEDKKISEENLL 679
Cdd:TIGR02168 825 RLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEAL-------LNERASLEEALALLRSELE 897
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 680 EEVEKAKVIADEAVKLQKEIDkRCQHKIAEMVALMEKHKDQYDKIIEERDSElglYKSKEQEQSSLRASLETELSNLKTE 759
Cdd:TIGR02168 898 ELSEELRELESKRSELRRELE-ELREKLAQLELRLEGLEVRIDNLQERLSEE---YSLTLEEAEALENKIEDDEEEARRR 973
|
....*....
gi 1622830651 760 LLSVKKQLE 768
Cdd:TIGR02168 974 LKRLENKIK 982
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
110-837 |
2.68e-12 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 71.33 E-value: 2.68e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 110 YKEAEKIKKWKVSIEAELKQKENKLQENRKIIEAQRK--AIQELQFGNEKVSLKLEEgiQENKDLIKENNATRHLCNLLK 187
Cdd:PTZ00121 1220 AEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKfeEARMAHFARRQAAIKAEE--ARKADELKKAEEKKKADEAKK 1297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 188 ETCARSAEKTKKYEYEREETRQvymdLNNNIEKMVTAFEELRVQAENSRLEMHFKLKEDYEKIQHLEQEYKKEVNDKEKQ 267
Cdd:PTZ00121 1298 AEEKKKADEAKKKAEEAKKADE----AKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKK 1373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 268 vsllliqiSEKENKMKDLTFLLEESR--DKVNQLEEKTKLQSENLKQSIE---KQHHLTKELEDIKVS--LQRSVSTQKA 340
Cdd:PTZ00121 1374 --------EEAKKKADAAKKKAEEKKkaDEAKKKAEEDKKKADELKKAAAakkKADEAKKKAEEKKKAdeAKKKAEEAKK 1445
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 341 LEEDLQIAtkticqltEEKEAQMEAFNKARAAHSFVVTEFETTICSLKELLRTEQQRLEKSEDQLKiLTMELQKKSSELE 420
Cdd:PTZ00121 1446 ADEAKKKA--------EEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAK-KAAEAKKKADEAK 1516
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 421 EMTKLTNNKEVELEELKKVLGEKEKLLYENKQFE-KIAEELKGTEQelIGLLQAREKEVHDLEIQLTAITTSEQYYSKEV 499
Cdd:PTZ00121 1517 KAEEAKKADEAKKAEEAKKADEAKKAEEKKKADElKKAEELKKAEE--KKKAEEAKKAEEDKNMALRKAEEAKKAEEARI 1594
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 500 KDLKTELENEKLKNIELTSHCNKLSLENKELTQETsdmtlELKNQQEDINNNKKREERMLKQIENLEETETQLRNELEYV 579
Cdd:PTZ00121 1595 EEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAE-----EEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKK 1669
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 580 REELKQKRDEVKCKLDKSEENCNNLRKQVENKNKyIEELQQENKALKKKGTAESKQLNVYEIKVNKLELELESAKQKFGE 659
Cdd:PTZ00121 1670 AEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKK-AEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEE 1748
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 660 ITdtyQKEIEDKKISEENLLEEVEKAKVIADEAVKLQKEIDKRCQHKIAEMVALMEKHKDQYDKIIE-ERDSELGLYKSK 738
Cdd:PTZ00121 1749 AK---KDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIFDNFANIIEgGKEGNLVINDSK 1825
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 739 EQEQSSLRASLETELSNLKTELLSVKKQLEIEREEKEKLKREAKENtatlKEKKDKKTQTSLLETPEMYWKFDSKAVPSQ 818
Cdd:PTZ00121 1826 EMEDSAIKEVADSKNMQLEEADAFEKHKFNKNNENGEDGNKEADFN----KEKDLKEDDEEEIEEADEIEKIDKDDIERE 1901
|
730
....*....|....*....
gi 1622830651 819 TISRNFTSVDHGKSKDKRD 837
Cdd:PTZ00121 1902 IPNNNMAGKNNDIIDDKLD 1920
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
255-802 |
4.47e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 70.35 E-value: 4.47e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 255 QEYKKEVndKEKQVSLLLIQISEKENKMKDLTFLLEESRDKVNQLEEKTKLQSENLKQSIEKQHHLTKELEDIKVSLQRS 334
Cdd:COG1196 216 RELKEEL--KELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYEL 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 335 VSTQKALEEDLQIATKTICQLTEEKEAQMEAFNKARAAHSfvvtefetticSLKELLRTEQQRLEKSEDQLKILTMELQK 414
Cdd:COG1196 294 LAELARLEQDIARLEERRRELEERLEELEEELAELEEELE-----------ELEEELEELEEELEEAEEELEEAEAELAE 362
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 415 KSSELEEmtkltnnkevELEELKKVLGEKEKLLYENKQFEKIAEELKGTEQELIGLLQAREKEVHDLEIQLTAITTSEQY 494
Cdd:COG1196 363 AEEALLE----------AEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAE 432
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 495 YSKEVKDLKTELENEKLKNIELTSHCNKLSLENKELTQETSDMTLELKNQQEDINNNKKREERMLKQIENLEE-----TE 569
Cdd:COG1196 433 LEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGflegvKA 512
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 570 TQLRNELEYVREELKQKRDEVKCKLDKSEENCNNLRKQVENKNKYIEELQQENKALKKKGTAEskqlnvyeikvnklELE 649
Cdd:COG1196 513 ALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRAT--------------FLP 578
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 650 LESAKQKFGEITDTYQKEIEDKKISEENLLEEVEKAKVIADEAVKLQKEIDKRCQHKIAEMVALMEKHKD--QYDKIIEE 727
Cdd:COG1196 579 LDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREvtLEGEGGSA 658
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1622830651 728 RDSELGLYKSKEQEQSSLRASLETELSNLKTELLSVKKQLEIEREEKEKLKREAKENTATLKEKKDKKTQTSLLE 802
Cdd:COG1196 659 GGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAE 733
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
451-752 |
7.21e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 69.58 E-value: 7.21e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 451 KQFEKIAEELKGTEQELIGL-LQAREKEVHDLEIQLTAITTSEQYYSKEVKDLKTELENEKLKNIELTSHCNKLSLENKE 529
Cdd:COG1196 213 ERYRELKEELKELEAELLLLkLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYE 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 530 LTQETSDMTLELKNQQEDINNNKKREERMLKQIENLEETETQLRNELeyvrEELKQKRDEVKCKLDKSEENCNNLRKQVE 609
Cdd:COG1196 293 LLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEEL----EELEEELEEAEEELEEAEAELAEAEEALL 368
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 610 NKNKYIEELQQENKALKKKGTAESKQLNVYEIKVNKLELELESAKQkfgeitdtyqkEIEDKKISEENLLEEVEKAKVIA 689
Cdd:COG1196 369 EAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLE-----------RLERLEEELEELEEALAELEEEE 437
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1622830651 690 DEAVKLQKEIDKRCQHKIAEMVALMEKHKDQYDKIIEERDSELGLYKSKEQEQSSLRASLETE 752
Cdd:COG1196 438 EEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAE 500
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
112-773 |
2.37e-11 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 67.89 E-value: 2.37e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 112 EAEKIKKWKVSIEAELKQKENK---LQENRKIIEAQRKAIQELQFGNEKVSLKLEEGIQENKDLIKEnnatrhlcnlLKE 188
Cdd:pfam01576 13 ELQKVKERQQKAESELKELEKKhqqLCEEKNALQEQLQAETELCAEAEEMRARLAARKQELEEILHE----------LES 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 189 TCARSAEKTKKYEYEREETRQVYMDLNNNIEKMVTAFEELRVQAENSRLEMHfKLKEDYEKIQHLEQEYKKEVNDKEKQV 268
Cdd:pfam01576 83 RLEEEEERSQQLQNEKKKMQQHIQDLEEQLDEEEAARQKLQLEKVTTEAKIK-KLEEDILLLEDQNSKLSKERKLLEERI 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 269 SLLLIQISEKENKMKDLTFLLEESRDKVNQLEEKTKlQSENLKQSIEKqhhLTKELEDIKVSLQRSVSTQKALEEDLQIA 348
Cdd:pfam01576 162 SEFTSNLAEEEEKAKSLSKLKNKHEAMISDLEERLK-KEEKGRQELEK---AKRKLEGESTDLQEQIAELQAQIAELRAQ 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 349 TKTICQLTEEKEAQMEAFNKARAAHSFVVTEFETTICSLKELLRTEQQRLEKSEDQLKILTMELQKKSSELEEMTKLTN- 427
Cdd:pfam01576 238 LAKKEEELQAALARLEEETAQKNNALKKIRELEAQISELQEDLESERAARNKAEKQRRDLGEELEALKTELEDTLDTTAa 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 428 ------NKEVELEELKKVLGEKEKL---------LYENKQFEKIAEELKGTEQELIGL---LQAREKEVHDLEIQLTAIT 489
Cdd:pfam01576 318 qqelrsKREQEVTELKKALEEETRSheaqlqemrQKHTQALEELTEQLEQAKRNKANLekaKQALESENAELQAELRTLQ 397
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 490 TSEQYYSKEVKDLKTELEneklkniELTSHCNKLSLENKELTQETSDMTLELKNQQEDINNNKKREERMLKQIENLeetE 569
Cdd:pfam01576 398 QAKQDSEHKRKKLEGQLQ-------ELQARLSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSL---E 467
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 570 TQLRNELEYVREELKQKRDeVKCKLDKSEENCNNLRKQVE-------NKNKYIEELQQENKALKKKGTAESKQLNVYEIK 642
Cdd:pfam01576 468 SQLQDTQELLQEETRQKLN-LSTRLRQLEDERNSLQEQLEeeeeakrNVERQLSTLQAQLSDMKKKLEEDAGTLEALEEG 546
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 643 VNKLELELESAKQKFGEITDTYQKEIEDKKiseeNLLEEVEKAKVIADEAVKLQKEIDKRcQHKIAEMVAlmeKHKDQYD 722
Cdd:pfam01576 547 KKRLQRELEALTQQLEEKAAAYDKLEKTKN----RLQQELDDLLVDLDHQRQLVSNLEKK-QKKFDQMLA---EEKAISA 618
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|.
gi 1622830651 723 KIIEERDSELGLYKSKEQEQSSLRASLEtELSNLKTELLSVKKQLEIEREE 773
Cdd:pfam01576 619 RYAEERDRAEAEAREKETRALSLARALE-EALEAKEELERTNKQLRAEMED 668
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
199-794 |
6.24e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 66.62 E-value: 6.24e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 199 KYEYEREETRQVYMDLNNNIEKMVTAFEELRVQAEN-----SRLEMHFKLKEDYEKIQHL-----EQEYKKEVNDKEKQV 268
Cdd:TIGR02168 169 KYKERRKETERKLERTRENLDRLEDILNELERQLKSlerqaEKAERYKELKAELRELELAllvlrLEELREELEELQEEL 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 269 SLLLIQISEKENKMKDLTFLLEESRDKVNQLEEKTKLQSENLKQSIEKQHHLTKELEDIKVSLQRSVSTQKALEEDLQIA 348
Cdd:TIGR02168 249 KEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEEL 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 349 TKTICQL----------TEEKEAQMEAFNKARAAHSFVVTEFETTICSLKELLRTEQQRLEKSEDQLKILTMELQKKSSE 418
Cdd:TIGR02168 329 ESKLDELaeelaeleekLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEAR 408
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 419 LEEMTK------------LTNNKEVELEELKKVLGEKEKLLYE-NKQFEKIAEELKGTEQELIGLLQAR---EKEVHDLE 482
Cdd:TIGR02168 409 LERLEDrrerlqqeieelLKKLEEAELKELQAELEELEEELEElQEELERLEEALEELREELEEAEQALdaaERELAQLQ 488
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 483 IQLTAITTSEQYYSKEVKDLKTELEN---------------------EKLKNIELTSHCNKLSLENKE--------LTQE 533
Cdd:TIGR02168 489 ARLDSLERLQENLEGFSEGVKALLKNqsglsgilgvlselisvdegyEAAIEAALGGRLQAVVVENLNaakkaiafLKQN 568
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 534 TSD--MTLELKNQQEDINNNKKREERM-----LKQIENLEETETQLRNELEY---------------------------- 578
Cdd:TIGR02168 569 ELGrvTFLPLDSIKGTEIQGNDREILKniegfLGVAKDLVKFDPKLRKALSYllggvlvvddldnalelakklrpgyriv 648
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 579 ----------------------VREELKQKRDEVKCKLDKSEENCNNLRKQVENKNKYIEELQQENKALKKKGTAESKQL 636
Cdd:TIGR02168 649 tldgdlvrpggvitggsaktnsSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQI 728
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 637 NVYEIKVNKLELELESAKQKFGEITDTYQKEIEDKKISEENLLEEVEKAKVIADEAVKLQKEIDKrcqhkiaemvalMEK 716
Cdd:TIGR02168 729 SALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQ------------LKE 796
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1622830651 717 HKDQYDKIIEERDSELGLYKSKEQEQSSLRASLETELSNLKTELLSVKKQLEIEREEKEKLKREAKENTATLKEKKDK 794
Cdd:TIGR02168 797 ELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESE 874
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
194-507 |
7.00e-11 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 66.63 E-value: 7.00e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 194 AEKTKKYEYEREETRQVymdlNNNIEKMVTAFEELRVQAEnsRLEMHFKLKEDYEKIQHLEQEYK-----KEVNDKEKQV 268
Cdd:TIGR02169 166 AEFDRKKEKALEELEEV----EENIERLDLIIDEKRQQLE--RLRREREKAERYQALLKEKREYEgyellKEKEALERQK 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 269 SLLLIQISEKENKMKDLTFLLEESRDKVNQLEEKTKLQSENLKQ-SIEKQHHLTKELEDIKVSLQRSVSTQKALEEDLQI 347
Cdd:TIGR02169 240 EAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDlGEEEQLRVKEKIGELEAEIASLERSIAEKERELED 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 348 ATKTICQLTEE---KEAQMEAFNKARAAHSFVVTEFETTICSLKELLRTEQQRLEKSEDQLKILTMELQKKSSELEemtK 424
Cdd:TIGR02169 320 AEERLAKLEAEidkLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLE---K 396
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 425 LTNNKEVELEELKKVLGEKEKLLYENKQFEKIAEELKGTEQELIGLLQAREKEVHDLEIQLTAITTSEQYYSKEVKDLKT 504
Cdd:TIGR02169 397 LKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKE 476
|
...
gi 1622830651 505 ELE 507
Cdd:TIGR02169 477 EYD 479
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
354-701 |
4.81e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 63.93 E-value: 4.81e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 354 QLTEEKEAQMEAFNKARAAHSFVVtEFETTICSLKELLRTEQQRLEKSEDQLKILTMELQKKSSELEEMTKLTNNKEVEL 433
Cdd:TIGR02169 696 ELRRIENRLDELSQELSDASRKIG-EIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDL 774
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 434 EELKKVLGEKEkllyenkqfekiAEELKGTEQELIGLLQAREKEVHDLEIQLTAITTSEQYYSKEVKDLKTELENEKLKN 513
Cdd:TIGR02169 775 HKLEEALNDLE------------ARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQR 842
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 514 IELTShcnklslENKELTQETSDMTLELKNQQEDINNNKKREERMLKQIENLEETetqlRNELEYVREELKQKRDEVKCK 593
Cdd:TIGR02169 843 IDLKE-------QIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKE----RDELEAQLRELERKIEELEAQ 911
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 594 LDKSEENCNNLRKQVENKNKYIEELQqenkALKKKGTAESKQLNVYEiKVNKLELELESAKQKFGEITdtyQKEIEDKKI 673
Cdd:TIGR02169 912 IEKKRKRLSELKAKLEALEEELSEIE----DPKGEDEEIPEEELSLE-DVQAELQRVEEEIRALEPVN---MLAIQEYEE 983
|
330 340
....*....|....*....|....*...
gi 1622830651 674 SEENLLEEVEKAKVIADEAVKLQKEIDK 701
Cdd:TIGR02169 984 VLKRLDELKEKRAKLEEERKAILERIEE 1011
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
100-794 |
1.94e-09 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 61.91 E-value: 1.94e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 100 EALSRVYSKLYKEAEKIKKWKVSIEAELKQKEN-KLQENRKIIEAQRKAIQELQFGNEKVSLKLEEGIQENKDLIKENNA 178
Cdd:pfam02463 169 RKKKEALKKLIEETENLAELIIDLEELKLQELKlKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRD 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 179 TRHLCNLLKETCARSAEKTKKYEYEREETRQVYMDLNNNIEKMVTAFEELRVQAENSRLEMHFK------LKEDYEKIQH 252
Cdd:pfam02463 249 EQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDeeklkeSEKEKKKAEK 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 253 LEQEYKKEVNDKEKQVSLLLIQISEKENKMKDLTFLLEESRDKVNQLEEKTKLQSENLKQSIEKqhhLTKELEDIKVSLQ 332
Cdd:pfam02463 329 ELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKL---KEEELELKSEEEK 405
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 333 RSVSTQKALEEDLQIATKTICQLTEEKEAQMEAFNKARAAHSFVVTEFETTICSLKELLRTE----------QQRLEKSE 402
Cdd:pfam02463 406 EAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELkksedllketQLVKLQEQ 485
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 403 DQLKILTMELQKKSSELEEMTKLTNNKEVELEELKKVLGEKEKLLYENKQFEKIAEELKGT------EQELIGLLQAREK 476
Cdd:pfam02463 486 LELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAIStaviveVSATADEVEERQK 565
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 477 EVHDLEIQLTAITTSEQYYSKEVKDLKTELENEKLKNIELTSHCNKLSLENKELTQETSDMTLELKNQQEDINNNKKREE 556
Cdd:pfam02463 566 LVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKE 645
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 557 RMLKQIENLEETETQlRNELEYVREELKQKRDEVKCKLDKSEENCNNLRKQVENKNKYIEELQQENKALKKKGTAESKQL 636
Cdd:pfam02463 646 SGLRKGVSLEEGLAE-KSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLA 724
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 637 NVYEIKVNKLELELESAKQKFGEITDTYQKEIEDKKISEENLLEEVEKAKVIADEAVKLQK---EIDKRCQHKIAEMVAL 713
Cdd:pfam02463 725 DRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKlkvEEEKEEKLKAQEEELR 804
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 714 MEKHKDQYDKIIEERDSELGLYKSKEQEQSSLRASLETELSNLKTELLSVKKQLEIEREEKEKLKREAKENTATLKEKKD 793
Cdd:pfam02463 805 ALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKL 884
|
.
gi 1622830651 794 K 794
Cdd:pfam02463 885 K 885
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
242-512 |
1.96e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 61.88 E-value: 1.96e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 242 KLKEDYEKIQHLEQEYKKEVNDKEKQVSLLLIQISEKENKMKDLTFLLEESRDKVNQLEEKTKLQSENLKQSIEKQHHLT 321
Cdd:COG1196 236 ELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELE 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 322 KELEDIKVSLQRSVSTQKALEEDLQIATKTICQLTEEKEAQMEAFNKARAAhsfvvtefetticsLKELLRTEQQRLEKS 401
Cdd:COG1196 316 ERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEA--------------LLEAEAELAEAEEEL 381
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 402 EDQLKILTMELQKKSSELEEMTKLTNNKEVELEELKKVLGEKEKLLYENKQFEKIAEELKGTEQELIGLLQAREKEVHDL 481
Cdd:COG1196 382 EELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEAL 461
|
250 260 270
....*....|....*....|....*....|.
gi 1622830651 482 EIQLTAITTSEQYYSKEVKDLKTELENEKLK 512
Cdd:COG1196 462 LELLAELLEEAALLEAALAELLEELAEAAAR 492
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
242-613 |
2.91e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 61.24 E-value: 2.91e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 242 KLKEDYEKIQHLEQEYKKEVNDKEKQVSLLLIQISEKENKMKDLTFLLEESRDKVNQLEEKTKLQSENLKQSIEKQHHLT 321
Cdd:TIGR02169 671 SEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLE 750
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 322 KELEDIKvslqrsvSTQKALEEDLQIATKTICQLTEEKEAQmeafnKARAAHSFV------VTEFETTICSLKELLRTEQ 395
Cdd:TIGR02169 751 QEIENVK-------SELKELEARIEELEEDLHKLEEALNDL-----EARLSHSRIpeiqaeLSKLEEEVSRIEARLREIE 818
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 396 QRLEKSEDQLKILTMELQKKSSELEEMTKLTNNKEVELEELKKVLGEkekllyenkqFEKIAEELKGTEQELIGLLQARE 475
Cdd:TIGR02169 819 QKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEE----------LEEELEELEAALRDLESRLGDLK 888
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 476 KEVHDLEIQLTAIttseqyySKEVKDLKTELENEKLKNIELTSHCNKLSLENKELTQETSDMtLELKNQQEDINNNKKRE 555
Cdd:TIGR02169 889 KERDELEAQLREL-------ERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGED-EEIPEEELSLEDVQAEL 960
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*...
gi 1622830651 556 ERMLKQIENLEetETQLRNELEYvrEELKQKRDEVKCKLDKSEENCNNLRKQVENKNK 613
Cdd:TIGR02169 961 QRVEEEIRALE--PVNMLAIQEY--EEVLKRLDELKEKRAKLEEERKAILERIEEYEK 1014
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
355-747 |
5.00e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 60.34 E-value: 5.00e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 355 LTEEKEAQMEAFNK-ARAAHSFVVTEFETTICSLKELLRteqqRLEKSEDQLKILTMELQKKSSELEEMTKLTNNKEVEL 433
Cdd:COG1196 194 ILGELERQLEPLERqAEKAERYRELKEELKELEAELLLL----KLRELEAELEELEAELEELEAELEELEAELAELEAEL 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 434 EELKKVLGEKEKLLyenkqfekiaEELKGTEQELIGLLQAREKEVHDLEIQLTAITTSEQYYSKEVKDLKTELENEKLKN 513
Cdd:COG1196 270 EELRLELEELELEL----------EEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEEL 339
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 514 IELTSHCNKLSLENKELTQETSDMTLELKNQQEDINNNKKREERMLKQIENLEETETQLRNELEYVREELKQKRDEvkck 593
Cdd:COG1196 340 EELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLER---- 415
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 594 LDKSEENCNNLRKQVENKNKYIEELQQENKALKKKGTAESKQLNVYEIKVNKLELELESAKQKFGEItdtyqKEIEDKKI 673
Cdd:COG1196 416 LERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAEL-----LEELAEAA 490
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1622830651 674 SEENLLEEVEKAKVIADEAVKLQKEIDKrcQHKIAEMVALMEKHKDQYDKIIEERDSELGLYKSKEQEQSSLRA 747
Cdd:COG1196 491 ARLLLLLEAEADYEGFLEGVKAALLLAG--LRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAA 562
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
108-793 |
5.30e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 60.54 E-value: 5.30e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 108 KLYKEAEKIKKWKVSIEAELKQKENKLQENRKIIEAQR----KAIQELQFGNEKVSLKLEEGIQENKDLIKENNA----- 178
Cdd:PTZ00121 1098 GKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKaedaRKAEEARKAEDAKRVEIARKAEDARKAEEARKAedakk 1177
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 179 ---------TRHLCNLLKETCARSAEKTKKYEYEREETRQVYMDLNNNIEKmVTAFEELRVQAENSRLEMHFKLKEDYEK 249
Cdd:PTZ00121 1178 aeaarkaeeVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEA-VKKAEEAKKDAEEAKKAEEERNNEEIRK 1256
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 250 IQHL---------------EQEYKKEVNDKEKQVSLLLIQISEKENKMKDLTFLLEESR--DKVNQLEEKTKLQSENLKQ 312
Cdd:PTZ00121 1257 FEEArmahfarrqaaikaeEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKkaDEAKKKAEEAKKKADAAKK 1336
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 313 SIE----KQHHLTKELEDIKVSLQRSVSTQKALEEDLQIATKTICQLTEEKEAQMEAFNKARAAHSFVVTEFETticSLK 388
Cdd:PTZ00121 1337 KAEeakkAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADEL---KKA 1413
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 389 ELLRTEQQRLEKSEDQLKiLTMELQKKSSELEEMTKLTNNKE--VELEELKKVLGEKEKLLYENKQFE--KIAEELKGTE 464
Cdd:PTZ00121 1414 AAAKKKADEAKKKAEEKK-KADEAKKKAEEAKKADEAKKKAEeaKKAEEAKKKAEEAKKADEAKKKAEeaKKADEAKKKA 1492
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 465 QELIGLLQAREKEVHDLEIQLTAITTSEQYYSKEVKDLKTELENEKLKNIELTSHCNKLSlENKELTQETSDMTLELKNQ 544
Cdd:PTZ00121 1493 EEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELK-KAEELKKAEEKKKAEEAKK 1571
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 545 QEDINNNKKREERMLKQIEnleetETQLRNELEYVREELKQKRDEVKcKLDKSEENCNNLRKQVENKnKYIEELQQENKA 624
Cdd:PTZ00121 1572 AEEDKNMALRKAEEAKKAE-----EARIEEVMKLYEEEKKMKAEEAK-KAEEAKIKAEELKKAEEEK-KKVEQLKKKEAE 1644
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 625 LKKKGTAESKQLNVYEIKVNKLELELESAKQKFGEItdtyQKEIEDKKISEENLLEEVEKAKVIADEAVKLQKEIDKRCQ 704
Cdd:PTZ00121 1645 EKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEA----KKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEE 1720
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 705 HKIAEMValmEKHKDQYDKIIEERDSELGLYKSKEQEQSSLRASLETElSNLKTELLSVKKQLEIEREEKEKLKREAKEN 784
Cdd:PTZ00121 1721 LKKAEEE---NKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKE-EEKKAEEIRKEKEAVIEEELDEEDEKRRMEV 1796
|
....*....
gi 1622830651 785 TATLKEKKD 793
Cdd:PTZ00121 1797 DKKIKDIFD 1805
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
93-663 |
6.30e-09 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 60.03 E-value: 6.30e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 93 DSDLENSEALSRVYSKLYKEAEKIKKWKVSIEAELKQKENKLQENRKIIEAQRKAIQELqfgnEKVSLKLEEGIQENKDL 172
Cdd:TIGR04523 113 KNDKEQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEEL----ENELNLLEKEKLNIQKN 188
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 173 IKENNATRHLCNLLKETCARSAEKTKKYEYEREETRQVYMDLNNNIEKMVTAFEELRVQAENSRLEMHfKLKEDYEKIQH 252
Cdd:TIGR04523 189 IDKIKNKLLKLELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLN-QLKDEQNKIKK 267
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 253 LEQEYKKEVNDKEKQVSLLLIQISEKENKMKDLTFLLEESRDKV------NQLEEKTKLQSEnLKQSIEKQHHLTKELED 326
Cdd:TIGR04523 268 QLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKEQDWNKElkselkNQEKKLEEIQNQ-ISQNNKIISQLNEQISQ 346
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 327 IKVSLQRSVSTQKALEEDLqiatkticqltEEKEAQMEAFNKARAAHSFVVTEFETTICSLKELLRTEQQRLEKSEDQLK 406
Cdd:TIGR04523 347 LKKELTNSESENSEKQREL-----------EEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIK 415
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 407 ILTMELQKKSSELEEMTKLTNNKEVELEELKKVLGEKEKLLyenKQFEKIAEELKGTEQELIGLLQAREKEVHDLEIQLT 486
Cdd:TIGR04523 416 KLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELII---KNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELK 492
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 487 AITTSEQYYSKEVKDLKTELENEKLKNIELTSHCNKLSLENKELTQETSDMTLELKNQQEDINNNKKREERMLKQienle 566
Cdd:TIGR04523 493 SKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKKENLEKEIDEKN----- 567
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 567 etetQLRNELEYVREELKQKRDEVKCKLDKSEENCNNLRKQVENKNKYIEELQQENKALKKKGTAESKQLNVYEIKVNKL 646
Cdd:TIGR04523 568 ----KEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKL 643
|
570
....*....|....*..
gi 1622830651 647 ELELESAKQKFGEITDT 663
Cdd:TIGR04523 644 KQEVKQIKETIKEIRNK 660
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
249-780 |
3.35e-08 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 57.82 E-value: 3.35e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 249 KIQHLEQEYKKEVNDKEKQVSLLLIQISEKENKMKDLTfllEESRDKVNQLEEK-TKLQSENLKQSIEKQH--------- 318
Cdd:pfam15921 332 ELREAKRMYEDKIEELEKQLVLANSELTEARTERDQFS---QESGNLDDQLQKLlADLHKREKELSLEKEQnkrlwdrdt 408
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 319 -------HLTKELEDIKVSLQRSVSTQKALEEDLQiatkticQLTEEKEAQMEAFNKARAAHSFVVTEFETTICSLK--- 388
Cdd:pfam15921 409 gnsitidHLRRELDDRNMEVQRLEALLKAMKSECQ-------GQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRkvv 481
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 389 ELLRTEQQRLEKSEDQLKILTMELQKKSSELE----EMTKLTNNKEVELEELKKVLGEKEKLlyENKQFEKIAEELKGTE 464
Cdd:pfam15921 482 EELTAKKMTLESSERTVSDLTASLQEKERAIEatnaEITKLRSRVDLKLQELQHLKNEGDHL--RNVQTECEALKLQMAE 559
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 465 QE-LIGLLQAREKEVHDLEIQ----LTAITTSEQYYSKEVKDLKTELENEKLKNieltshcNKLSLENKELTQETSDMTL 539
Cdd:pfam15921 560 KDkVIEILRQQIENMTQLVGQhgrtAGAMQVEKAQLEKEINDRRLELQEFKILK-------DKKDAKIRELEARVSDLEL 632
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 540 ElknQQEDINNNKKReermLKQIENLEETETQLRNELEYVREELKQkrdevkckldkseencnnlrkqvenknkyieeLQ 619
Cdd:pfam15921 633 E---KVKLVNAGSER----LRAVKDIKQERDQLLNEVKTSRNELNS--------------------------------LS 673
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 620 QENKALKKKGTAESKQLnvyEIKVNKLELELESAkqkfgeitdtyQKEIEDKKiseeNLLEEVEKAKviaDEAVKLQKEI 699
Cdd:pfam15921 674 EDYEVLKRNFRNKSEEM---ETTTNKLKMQLKSA-----------QSELEQTR----NTLKSMEGSD---GHAMKVAMGM 732
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 700 DKRCQHKIAEMVALMEKhkdqyDKIIEERDSELGLYKSKEQEQSSlraSLETELSNLKTELLSVKKQLEIEREEKEKLKR 779
Cdd:pfam15921 733 QKQITAKRGQIDALQSK-----IQFLEEAMTNANKEKHFLKEEKN---KLSQELSTVATEKNKMAGELEVLRSQERRLKE 804
|
.
gi 1622830651 780 E 780
Cdd:pfam15921 805 K 805
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
570-783 |
6.86e-08 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 55.93 E-value: 6.86e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 570 TQLRNELEYVREELKQKRDEVKCKLDKSEENCNNLRKQVENKNKYIEELQQENKALKKKGTAESKQLNVYEIKVNKLELE 649
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 650 LESAKQKFGEITDTYQKEIEDKKI----SEENLLEEVEKAKVIADEAVKLQKEID--KRCQHKIAEMVALMEKHKDQYDK 723
Cdd:COG4942 99 LEAQKEELAELLRALYRLGRQPPLalllSPEDFLDAVRRLQYLKYLAPARREQAEelRADLAELAALRAELEAERAELEA 178
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 724 IIEERDSELGLYKSKEQEQSSLRASLETELSNLKTELLSVKKQLEIEREEKEKLKREAKE 783
Cdd:COG4942 179 LLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAA 238
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
122-726 |
8.37e-08 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 56.18 E-value: 8.37e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 122 SIEAELKQKENKLQENRKI--------------IEAQRKAIQELQFGNEKVSLKLEEGIQENKDLIKENNATRHLCNLLK 187
Cdd:TIGR04523 44 TIKNELKNKEKELKNLDKNlnkdeekinnsnnkIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIKNDKEQKNKLE 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 188 ETCARSAEKTKKYEYEREETRQVYMDLNNNIEKMVTAFEELRVQAENSRLEMHfKLKEDYEKIQHLEQEYKKEVNDKEKQ 267
Cdd:TIGR04523 124 VELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELN-LLEKEKLNIQKNIDKIKNKLLKLELL 202
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 268 VS----------LLLIQISEKENKMKDLTFLLEESRDKVNQLEEKTKLQSENLKQSIEKQHHLTKELEDIKVSLQRSVST 337
Cdd:TIGR04523 203 LSnlkkkiqknkSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKK 282
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 338 QKALEEDLQIATKTICQLTEEKEAQMEAFNKARaahsfvVTEFETTICSLKELLRTEQQRLEKSEDQLKILTMELQKKSS 417
Cdd:TIGR04523 283 IKELEKQLNQLKSEISDLNNQKEQDWNKELKSE------LKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSES 356
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 418 ELEEMTKLTNNKEVELEELKKvlgEKEKLLYENKQFEKIAEELKGTEQELIGLLQAREKEVHDLEIQLTAITTSEQYYSK 497
Cdd:TIGR04523 357 ENSEKQRELEEKQNEIEKLKK---ENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKE 433
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 498 EVKDLKTELENEKLKNIELTSHCNKLSLENKELTQETSDMTLELKNQQEDINNNKKREERMLKQIENLEETETQLRNELE 577
Cdd:TIGR04523 434 TIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVK 513
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 578 YVRE-------------------ELKQKRDEVKCKLDKSEENCNNLRKQVENKNKYIEELQQENKALKKKGTAESKQLNV 638
Cdd:TIGR04523 514 DLTKkisslkekieklesekkekESKISDLEDELNKDDFELKKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQ 593
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 639 YEIKVNKLELELESAKQKFGEITDTYqKEIEDKKISEENLLEEVEKAKVIADEAVKLQKEIDKRCQHKIAEMVALMEKHK 718
Cdd:TIGR04523 594 KEKEKKDLIKEIEEKEKKISSLEKEL-EKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETIKEIRNKWPEIIKKIKESK 672
|
....*...
gi 1622830651 719 DQYDKIIE 726
Cdd:TIGR04523 673 TKIDDIIE 680
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
287-632 |
8.52e-08 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 56.39 E-value: 8.52e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 287 FLLEESRDKVNQLEEKTKLQSENLKQSIEKQHHLTKELEDIKVSLQRSVSTQKALEEDLQiatkticQLTEEKEAQMEAF 366
Cdd:pfam12128 597 ASEEELRERLDKAEEALQSAREKQAAAEEQLVQANGELEKASREETFARTALKNARLDLR-------RLFDEKQSEKDKK 669
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 367 NKARAAH-SFVVTEFETTICSLKELLRTEQQRLEKSEDQLKILTMELQKKSSELEEMTKltnnkeVELEELKKVLGEKEk 445
Cdd:pfam12128 670 NKALAERkDSANERLNSLEAQLKQLDKKHQAWLEEQKEQKREARTEKQAYWQVVEGALD------AQLALLKAAIAARR- 742
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 446 llyenkqfEKIAEELKGTEQELIGLLQAR---EKEVHDLEiqlTAITTSEQYYSKEVKDLKTELENEKLKNIELTSHCNK 522
Cdd:pfam12128 743 --------SGAKAELKALETWYKRDLASLgvdPDVIAKLK---REIRTLERKIERIAVRRQEVLRYFDWYQETWLQRRPR 811
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 523 LSLENKELTQETSDMTLELKNQQEDINNNKKREERMLKQIENLE----ETETQLRNELEYVRE-----ELKQKRDEVKCK 593
Cdd:pfam12128 812 LATQLSNIERAISELQQQLARLIADTKLRRAKLEMERKASEKQQvrlsENLRGLRCEMSKLATlkedaNSEQAQGSIGER 891
|
330 340 350
....*....|....*....|....*....|....*....
gi 1622830651 594 LDKSEENCNNLRKQVENKNKYIEELQQENKALKKKGTAE 632
Cdd:pfam12128 892 LAQLEDLKLKRDYLSESVKKYVEHFKNVIADHSGSGLAE 930
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
395-633 |
8.62e-08 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 55.54 E-value: 8.62e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 395 QQRLEKSEDQLKILTMELQKKSSELEEMTKLTNNKEVELEELKKVLGEKEKLLYE-NKQFEKIAEELKGTEQELIGLLQA 473
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRAlEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 474 REKEVHDLEIQLTAITTSEQYYSKEVKdLKTELENEKLKNIELTshcnklslenKELTQETSDMTLELKNQQEDINNNKK 553
Cdd:COG4942 99 LEAQKEELAELLRALYRLGRQPPLALL-LSPEDFLDAVRRLQYL----------KYLAPARREQAEELRADLAELAALRA 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 554 REERMLKQIENLEETETQLRNELEYVREELKQKRDEVKCKLDKSEENCNNLRKQVENKNKYIEELQQENKALKKKGTAES 633
Cdd:COG4942 168 ELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAG 247
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
193-795 |
1.05e-07 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 56.13 E-value: 1.05e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 193 SAEKTKKYEYEREETRQVYMDLNNNIEKMVTAFEELRVQAENSRLEMHFK-LKEDYEKIQHLEQEYKKEVNDKEK---QV 268
Cdd:TIGR00618 251 AQEEQLKKQQLLKQLRARIEELRAQEAVLEETQERINRARKAAPLAAHIKaVTQIEQQAQRIHTELQSKMRSRAKllmKR 330
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 269 SLLLIQISEKENKMKDLTFLLEESrDKVNQLEEKTKLQSENLKQSIEKQHHLTKELEDIKvslqrsvstqkALEEDLQIA 348
Cdd:TIGR00618 331 AAHVKQQSSIEEQRRLLQTLHSQE-IHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKT-----------TLTQKLQSL 398
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 349 TKTICQLTEEkEAQMEAFNKARAAHSFVVTEFETTICSLKELLRTEQQRLEKSEDQLKILTMELQKKSSELEEMTKLTNN 428
Cdd:TIGR00618 399 CKELDILQRE-QATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQT 477
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 429 KEVELEElkkvlgEKEKllyeNKQFEKIAEELKGTEQELIGllQAREKEVHDLEIQLTAITTSE-QYYSKEVKDLKTELE 507
Cdd:TIGR00618 478 KEQIHLQ------ETRK----KAVVLARLLELQEEPCPLCG--SCIHPNPARQDIDNPGPLTRRmQRGEQTYAQLETSEE 545
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 508 NEKLKNIELTSHCNKLSLENKELTQETSDMTLELKNQQEDINNNKKREERMLKQIENLEETETQLRNELEYVREELKQKR 587
Cdd:TIGR00618 546 DVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQ 625
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 588 D--------------EVKCKLDKSEENCNNLRKQVENKNKYIEELQ----QENKALKKKGTAESKQLNVYEIKVNKLELE 649
Cdd:TIGR00618 626 DlqdvrlhlqqcsqeLALKLTALHALQLTLTQERVREHALSIRVLPkellASRQLALQKMQSEKEQLTYWKEMLAQCQTL 705
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 650 LESAKQKFGEitdtYQKEIEDKKISEENLLEEVEKAKVIADEAV-KLQKEIDKRCQHKiaemvALMEKHKDQYDKIIEER 728
Cdd:TIGR00618 706 LRELETHIEE----YDREFNEIENASSSLGSDLAAREDALNQSLkELMHQARTVLKAR-----TEAHFNNNEEVTAALQT 776
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1622830651 729 DSELGLYKSKEQEQSSLRASLETELSNLKTELLSVKKQLEIEREEKEKLKREAKENTATLKEKKDKK 795
Cdd:TIGR00618 777 GAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSAT 843
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
289-610 |
1.07e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 56.22 E-value: 1.07e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 289 LEESRDKVNQLEEKTKLQSENLKQSIEKQHHLTKELEDIKVSLQRSVSTQKALEEDLQIATKTICQLTEEkeaqmeafnk 368
Cdd:TIGR02168 679 IEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEER---------- 748
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 369 araahsfvVTEFETTICSLKELLRTEQQRLEKSEDQLKILTMELQKKSSELEEMTKLTNNKEVELEELKKVLGEkEKLLY 448
Cdd:TIGR02168 749 --------IAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTL-LNEEA 819
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 449 ENKQF--EKIAEELKGTEQELIGLLQAREKEVHDLEI---QLTAITTSEQYYSKEVKDLKTELENEKLKNIELTSHCNKL 523
Cdd:TIGR02168 820 ANLRErlESLERRIAATERRLEDLEEQIEELSEDIESlaaEIEELEELIEELESELEALLNERASLEEALALLRSELEEL 899
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 524 SLENKELTQETSDMTLELKNQQEDINNNKKREERMLKQIENLEEtetQLRNELEYVREELKQKRDEVKCKLDKSEENCNN 603
Cdd:TIGR02168 900 SEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQE---RLSEEYSLTLEEAEALENKIEDDEEEARRRLKR 976
|
....*..
gi 1622830651 604 LRKQVEN 610
Cdd:TIGR02168 977 LENKIKE 983
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
615-798 |
1.31e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 54.77 E-value: 1.31e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 615 IEELQQENKALKKKGTAESKQLNVYEIKVNKLELELESAKQKFGEITDTYQkEIEDKKISEENLLEEVEKakviadEAVK 694
Cdd:COG4942 22 AAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIR-ALEQELAALEAELAELEK------EIAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 695 LQKEIDKRcQHKIAEMVALMEKHKDQ-YDKIIEERDSELGLYKSKE--QEQSSLRASLETELSNLKTELLSVKKQLEIER 771
Cdd:COG4942 95 LRAELEAQ-KEELAELLRALYRLGRQpPLALLLSPEDFLDAVRRLQylKYLAPARREQAEELRADLAELAALRAELEAER 173
|
170 180
....*....|....*....|....*..
gi 1622830651 772 EEKEKLKREAKENTATLKEKKDKKTQT 798
Cdd:COG4942 174 AELEALLAELEEERAALEALKAERQKL 200
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
108-797 |
1.49e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 55.84 E-value: 1.49e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 108 KLYKEAEKIKKWKV----SIEAELKQKENKLQENRKIIEAQRKAIQELqfgnEKVSLKLEEGIQENKDLIKENNAtrhlc 183
Cdd:TIGR02169 202 RLRREREKAERYQAllkeKREYEGYELLKEKEALERQKEAIERQLASL----EEELEKLTEEISELEKRLEEIEQ----- 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 184 nLLKETCARSAEKTkkyEYEREETRQVYMDLNNNIEKMVTAFEELRVQAENSRLEMHfKLKEDYEKIQHLEQEYKKEVND 263
Cdd:TIGR02169 273 -LLEELNKKIKDLG---EEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLA-KLEAEIDKLLAEIEELEREIEE 347
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 264 KEKQVSLLLIQISEKENKMKDLTFLLEESRDKVNQLEEKTKLQSENLKQSIEKQHHLTKELEDIKVSLQRSVSTQKALEE 343
Cdd:TIGR02169 348 ERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNA 427
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 344 DLQIATKTICQLTEEKEAQMEAFNKAraahsfvvtefETTICSLKELLRTEQQRLEKSEDQLKILTMELQKKSSELEEM- 422
Cdd:TIGR02169 428 AIAGIEAKINELEEEKEDKALEIKKQ-----------EWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAe 496
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 423 -------TKLTNNKEVEL---EELKKVLGEKEKLLYENKQFEKIAE------------ELKGTEQELIGLLQARE----- 475
Cdd:TIGR02169 497 aqaraseERVRGGRAVEEvlkASIQGVHGTVAQLGSVGERYATAIEvaagnrlnnvvvEDDAVAKEAIELLKRRKagrat 576
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 476 -----------------KEVHDLEIQLTAITTSEQYYSKEVKDLKTELENEKLKNI-ELTSHCNKLSLENkELTQETSDM 537
Cdd:TIGR02169 577 flplnkmrderrdlsilSEDGVIGFAVDLVEFDPKYEPAFKYVFGDTLVVEDIEAArRLMGKYRMVTLEG-ELFEKSGAM 655
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 538 T---LELKNQQEDINNNKKREERMLKQIENLEETETQLRNELEYVREELKQKRDEVK----------CKLDKSEENCNNL 604
Cdd:TIGR02169 656 TggsRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSdasrkigeieKEIEQLEQEEEKL 735
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 605 RKQVENKNKYIEELQQENKALKKKGTAESKQLNVYEIKVNKLELELES-----AKQKFGEITDTYQK------EIEDKKI 673
Cdd:TIGR02169 736 KERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDlearlSHSRIPEIQAELSKleeevsRIEARLR 815
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 674 SEENLLEEVEKAKVIADEAVKLQKEIDKRCQHKIAEmvalMEKHKDQYDKIIEERDSELGLYKSKEQEQSSLRASLETEL 753
Cdd:TIGR02169 816 EIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKS----IEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKER 891
|
730 740 750 760
....*....|....*....|....*....|....*....|....
gi 1622830651 754 SNLKTELLSVKKQLEIEREEKEKLKREAKENTATLKEKKDKKTQ 797
Cdd:TIGR02169 892 DELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSE 935
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
558-786 |
1.83e-07 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 54.93 E-value: 1.83e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 558 MLKQIENLEETETQLRNELEYVR-EELKQKrdevkckldkSEENCNNLRKQVENKNKYIEELQQENKALKKkgtaESKQL 636
Cdd:PRK05771 61 KLRSYLPKLNPLREEKKKVSVKSlEELIKD----------VEEELEKIEKEIKELEEEISELENEIKELEQ----EIERL 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 637 NVYE-IKVN-KLELELESAKQKFGEITDTyqKEIEDKKISEENLLEEVEKAK-------VIADEAVKLQKEIDKRCQHKI 707
Cdd:PRK05771 127 EPWGnFDLDlSLLLGFKYVSVFVGTVPED--KLEELKLESDVENVEYISTDKgyvyvvvVVLKELSDEVEEELKKLGFER 204
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1622830651 708 AEMvalmeKHKDQYDKIIEERDSELglyKSKEQEQSSLRASLETELSNLKTELLSVKKQLEIEREEKEKLKREAKENTA 786
Cdd:PRK05771 205 LEL-----EEEGTPSELIREIKEEL---EEIEKERESLLEELKELAKKYLEELLALYEYLEIELERAEALSKFLKTDKT 275
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
111-815 |
2.21e-07 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 54.98 E-value: 2.21e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 111 KEAEKIKKWKVSIEAELKQKENKLQENRKIIEAQRKAIQELQFGNEKVSLKLEEGIQENKDLIKENNATRHLCNLLKETC 190
Cdd:pfam02463 300 SELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKK 379
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 191 ARSAEKTKKYEYEREETRQVYMDLNNNIEKMVTAFEELRVQAENSRLEMHFKLKEDYEKIQHLEQEYKKEVNDKEKQVSL 270
Cdd:pfam02463 380 KLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELK 459
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 271 LLIQISEKENKMKDLTFLLEESRDKVNQLEEKTKLQSENLKQSIEKQHHLTK--------ELEDIKVSLQRSVSTQKALE 342
Cdd:pfam02463 460 LLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVllalikdgVGGRIISAHGRLGDLGVAVE 539
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 343 EDLQIATKTICQLTEEKEAQMEAFNKARAAHSFVVTEFETTICSLKELLRTEQQRLEKSEDQLKILTMELQKKSSELEEM 422
Cdd:pfam02463 540 NYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDD 619
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 423 TKLTNNKEVELEELKKVLGEKEKLLYENKQFEKIAEELKGTEQELIGLLQAREKEVHDLEIQLTAITTSEQYYSKEVKDL 502
Cdd:pfam02463 620 KRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQL 699
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 503 KTELENEKLKNIELTSHCNKLSLENKELTQETSDMTLELKNQQEDINN-----NKKREERMLKQIENLEETETQLRNELE 577
Cdd:pfam02463 700 EIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEeeeeeEKSRLKKEEKEEEKSELSLKEKELAEE 779
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 578 YVREELKQKRDEVKCKLDKSEENCNNLRKQVENKNKYIEELQQENKALKKKGTAESKQLNVYEIKVNKLELELESAKQ-K 656
Cdd:pfam02463 780 REKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELErL 859
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 657 FGEITDTYQKEIEDKKISEENLLEEVEKAKVIADEAVKLQKEIDKR---CQHKIAEMVALMEKHKDQYDKIIEERDSELG 733
Cdd:pfam02463 860 EEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEEsqkLNLLEEKENEIEERIKEEAEILLKYEEEPEE 939
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 734 LYKSKEQEQSSLRASLETELSNLK------TELLSVKKQLEIEREEKEKLKREAKENTATLKEKKDKKTQTSLLETPEMY 807
Cdd:pfam02463 940 LLLEEADEKEKEENNKEEEEERNKrlllakEELGKVNLMAIEEFEEKEERYNKDELEKERLEEEKKKLIRAIIEETCQRL 1019
|
....*...
gi 1622830651 808 WKFDSKAV 815
Cdd:pfam02463 1020 KEFLELFV 1027
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
379-792 |
3.47e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 54.30 E-value: 3.47e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 379 EFETTICSLKELLRTEQQRLEKSEDQLKILTMELQKKSSELEEMTKLTNNKEVELEELKKVLGEKEKLLYENKQFEKIAE 458
Cdd:PRK03918 169 EVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELE 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 459 ELKGTEQELIGLLQAREKEVHDLEIQLTAIttseqyySKEVKDLKtELENEKLKNIELTSHCNKLSLENKELTQETSDMT 538
Cdd:PRK03918 249 SLEGSKRKLEEKIRELEERIEELKKEIEEL-------EEKVKELK-ELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLE 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 539 LELKNQQEDINNNKKREERMLKQIENLEETETQLRNELEYVREELKQKRDEVKCKLDKSEENCNNLRKqVENKNKYIEEL 618
Cdd:PRK03918 321 EEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEK-LEKELEELEKA 399
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 619 QQENKALKKKGTAESKQLNVYEIKVNKLELELESAKQKF----GEITDTYQKEIEDKKISEenlLEEVEKAKVIADEAVK 694
Cdd:PRK03918 400 KEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCpvcgRELTEEHRKELLEEYTAE---LKRIEKELKEIEEKER 476
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 695 LQKEIDKRCQHKIAEMVALMeKHKDQYDKIIEERDSELGLYKSKEQEQSSLRASLETELSNLKTELLSVKKQLEiEREEK 774
Cdd:PRK03918 477 KLRKELRELEKVLKKESELI-KLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELE-KLEEL 554
|
410
....*....|....*...
gi 1622830651 775 EKLKREAKENTATLKEKK 792
Cdd:PRK03918 555 KKKLAELEKKLDELEEEL 572
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
100-671 |
3.79e-07 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 54.26 E-value: 3.79e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 100 EALSRVYSKLYKEAEKIKKWKVSIEAELKQKENKLQENRKIIEAQR---KAIQELQFGNEKVSLKLEEGIQENKDLIKEN 176
Cdd:TIGR04523 169 EELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNLKKKIQKNKsleSQISELKKQNNQLKDNIEKKQQEINEKTTEI 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 177 NATRHLCNLLKETCARSAEKTKKYEYEREETRQVYMDLNNNIEKMVTAFEELRVQAENsrlEMHFKLKEDYEKIQHLEQE 256
Cdd:TIGR04523 249 SNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKEQ---DWNKELKSELKNQEKKLEE 325
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 257 YKKEVNDKEKQVSLLLIQISEKENKMKDLTfllEESRDKVNQLEEKTKlQSENLKQSIEKQHHLTKELEDIKVSLQRSVS 336
Cdd:TIGR04523 326 IQNQISQNNKIISQLNEQISQLKKELTNSE---SENSEKQRELEEKQN-EIEKLKKENQSYKQEIKNLESQINDLESKIQ 401
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 337 TQKALEEDLQIATKTICQLTEEKEAQMEAFNKARAAHSFVVTEFETTICSLKELLRTEQQRLEKSEDQLKILTMELQKKS 416
Cdd:TIGR04523 402 NQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIK 481
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 417 SELEEMTKLTNNKEVELEELKKvlgEKEKLLYENKQFEKIAEELKGTEQELIGLLQAREKEVHDLEIQLTAITTSEQY-- 494
Cdd:TIGR04523 482 QNLEQKQKELKSKEKELKKLNE---EKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKKen 558
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 495 YSKEVKDLKTELENEKLKNIELTSHCNKLSLENKELTQETSDMTLELKNQQEDINNNKKREERMLKQIENLEETETQLRN 574
Cdd:TIGR04523 559 LEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKS 638
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 575 ELEYVREELKQKRDEVKCKLDKSEENCNNLRKQVENKNKYIEELQQENKAL----KKKGTAESKQLNVYEIKVNKLELEL 650
Cdd:TIGR04523 639 KKNKLKQEVKQIKETIKEIRNKWPEIIKKIKESKTKIDDIIELMKDWLKELslhyKKYITRMIRIKDLPKLEEKYKEIEK 718
|
570 580
....*....|....*....|..
gi 1622830651 651 ESAK-QKFGEITDTYQKEIEDK 671
Cdd:TIGR04523 719 ELKKlDEFSKELENIIKNFNKK 740
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
260-795 |
5.61e-07 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 53.49 E-value: 5.61e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 260 EVNDKEKQVSLLLIQISEKENKMKDLTFLLEESRDKVNQLEEKTKLQSENLKQSIEKQHHLTKELEDIKVSLQRSVSTQK 339
Cdd:TIGR04523 34 EEKQLEKKLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIK 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 340 ALEEDLQIATKTICQLTEEKEAQmeafNKARAAHSFVVTEFETTICSLKELLRTEQQRLEKSEDQLKILTMELQKKSSEL 419
Cdd:TIGR04523 114 NDKEQKNKLEVELNKLEKQKKEN----KKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNI 189
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 420 EEMTKLTNNKEVELEELKKVLGEKEKLLYENKQFEKIAEELKGTEQELIGLLQAREKEVHDLEIQLTAITTSEQYYSKEV 499
Cdd:TIGR04523 190 DKIKNKLLKLELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQL 269
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 500 KDLKTELENEKLKNIELTSHCNKLSLE------------NKELTQETSDMTLELKNQQEDINNNKKREERMLKQIENLEE 567
Cdd:TIGR04523 270 SEKQKELEQNNKKIKELEKQLNQLKSEisdlnnqkeqdwNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKK 349
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 568 TETQLRNELEYVREELKQKRDEV---KCKLDKSEENCNNLRKQVENKNKYIEELQQENKALKKKGTAESKQLNVYEIKVN 644
Cdd:TIGR04523 350 ELTNSESENSEKQRELEEKQNEIeklKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIE 429
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 645 KLELELESAKQKFGEITDT---YQKEIEDKKISEENLLEEVEKAKVIADEAVKLQKEIDKRCQHKIAEMVALmEKHKDQY 721
Cdd:TIGR04523 430 RLKETIIKNNSEIKDLTNQdsvKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKL-NEEKKEL 508
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1622830651 722 DKIIEERDSELGLYKSKEQEQSSLRASLETELSNLKTELLSV-----KKQLEIEREEKEKLKREAKENTATLKEKKDKK 795
Cdd:TIGR04523 509 EEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDdfelkKENLEKEIDEKNKEIEELKQTQKSLKKKQEEK 587
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
106-775 |
8.64e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 53.15 E-value: 8.64e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 106 YSKLYKEAEKIKKW-----KVSIEAELKQKENKLQENRKIIEAQRKAIQE-----------LQFGNEKVSLKLEEGIQEN 169
Cdd:TIGR02169 213 YQALLKEKREYEGYellkeKEALERQKEAIERQLASLEEELEKLTEEISElekrleeieqlLEELNKKIKDLGEEEQLRV 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 170 KDLIKENNATRHLCN----LLKETCARSAEKTKKYEYEREETRQVYMDLNNNIE-------KMVTAFEELRVQAENSRLE 238
Cdd:TIGR02169 293 KEKIGELEAEIASLErsiaEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEeerkrrdKLTEEYAELKEELEDLRAE 372
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 239 MH---FKLKEDYEKIQHLEQE---YKKEVNDKEKQVSLLLIQISEKENKMKDLTFLLEESRDKVNQLEEKTKLQSENLKQ 312
Cdd:TIGR02169 373 LEevdKEFAETRDELKDYREKlekLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKK 452
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 313 SIEKQHHLTKELEDIKVSLQRSVSTQKALEEDLQIATKTICQLTEEKEAQMEAFNKARAAHSFVVTEFETTICSLKELLR 392
Cdd:TIGR02169 453 QEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVHGTVAQLGS 532
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 393 TEQQRLEKSE----DQLKILTMELQK---------KSSELEEMTKLTNNKEVELEELKKVLGEKEKLLYE------NKQF 453
Cdd:TIGR02169 533 VGERYATAIEvaagNRLNNVVVEDDAvakeaiellKRRKAGRATFLPLNKMRDERRDLSILSEDGVIGFAvdlvefDPKY 612
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 454 EK----------IAEELKGTEQELIGL-LQAREKEV----------HDLEIQLTAITTSEQYYSKEVKDLKTELENEKLK 512
Cdd:TIGR02169 613 EPafkyvfgdtlVVEDIEAARRLMGKYrMVTLEGELfeksgamtggSRAPRGGILFSRSEPAELQRLRERLEGLKRELSS 692
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 513 nieLTSHCNKLSLENKELTQETSDMTLELKNQQEDINNNKKREERMLKQIENLEETETQLRNELEYVREELkqkrDEVKC 592
Cdd:TIGR02169 693 ---LQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSEL----KELEA 765
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 593 KLDKSEENCNNLRKQVEN-----KNKYIEELQQENKALKKKGTAESKQLNVYEIKVNKLELELESAKQKFGEITDtYQKE 667
Cdd:TIGR02169 766 RIEELEEDLHKLEEALNDlearlSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQE-QRID 844
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 668 IEDKKISEENLLEEVEKAKviadeavklqKEIDKRCQHKIAEMVALMEKHKDqYDKIIEERDSELGLYKSKEQEQSSLRA 747
Cdd:TIGR02169 845 LKEQIKSIEKEIENLNGKK----------EELEEELEELEAALRDLESRLGD-LKKERDELEAQLRELERKIEELEAQIE 913
|
730 740
....*....|....*....|....*....
gi 1622830651 748 SLETELSNLKTELLSVKKQL-EIEREEKE 775
Cdd:TIGR02169 914 KKRKRLSELKAKLEALEEELsEIEDPKGE 942
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
560-802 |
8.78e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 53.02 E-value: 8.78e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 560 KQIENLEEtetQLRNELEY--VREELKQKRDEVKCKLDKseencnNLRKQVENKNKYIEELQQENKALKKKGTAESKQLN 637
Cdd:COG1196 200 RQLEPLER---QAEKAERYreLKEELKELEAELLLLKLR------ELEAELEELEAELEELEAELEELEAELAELEAELE 270
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 638 VYEIKVNKLELELESAKQKFGEITDTYQKEIEDKKISEENLLEEVEKAKVIADEAVKLQKEIDK------RCQHKIAEMV 711
Cdd:COG1196 271 ELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEEleeeleELEEELEEAE 350
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 712 ALMEKHKDQYDKIIEERDSELGLYKSKEQEQSSLR---ASLETELSNLKTELLSVKKQLEIEREEKEKLKREAKENTATL 788
Cdd:COG1196 351 EELEEAEAELAEAEEALLEAEAELAEAEEELEELAeelLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEAL 430
|
250
....*....|....
gi 1622830651 789 KEKKDKKTQTSLLE 802
Cdd:COG1196 431 AELEEEEEEEEEAL 444
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
123-373 |
1.13e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 52.63 E-value: 1.13e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 123 IEAELKQKENKLQENRKIIEAQRKAIQELQFGNEKVSLKLEEGIQENKDLIKENNATRHLCNLLKETCARSAEKTKKYEY 202
Cdd:COG1196 244 LEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEE 323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 203 EREETRQVYMDLNNNIEKMVTAFEELRVQAENSRLEMHfKLKEDYEKIQHLEQEYKKEVNDKEKQVSLLLIQISEKENKM 282
Cdd:COG1196 324 ELAELEEELEELEEELEELEEELEEAEEELEEAEAELA-EAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQL 402
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 283 KDLTFLLEESRDKVNQLEEKTKLQSENLKQSIEKQHHLTKELEDIKVSLQRSVSTQKALEEDLQIATKTICQLTEEKEAQ 362
Cdd:COG1196 403 EELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAEL 482
|
250
....*....|.
gi 1622830651 363 MEAFNKARAAH 373
Cdd:COG1196 483 LEELAEAAARL 493
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
88-684 |
1.97e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 52.07 E-value: 1.97e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 88 QEGLKDSDLENSEALSRVYSKLYKEAEKIKKWKVSIEAELKQKENKLQENRKIIEAQRKAIQELQFGNEKVSLKLEEGIQ 167
Cdd:PTZ00121 1299 EEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKK 1378
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 168 ENKDLIKENNATRHLCNLLK--ETCARSAEKTKKYEYEREETRQvymdLNNNIEKMVTAfEELRVQAENSRLEMhfKLKE 245
Cdd:PTZ00121 1379 KADAAKKKAEEKKKADEAKKkaEEDKKKADELKKAAAAKKKADE----AKKKAEEKKKA-DEAKKKAEEAKKAD--EAKK 1451
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 246 DYEKIQHLEQEYKKEvndKEKQVSLLLIQISEKENKMKDLTFLLEESRDKVNQL----EEKTKLQSENLKQSIEKQHHLT 321
Cdd:PTZ00121 1452 KAEEAKKAEEAKKKA---EEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAkkaaEAKKKADEAKKAEEAKKADEAK 1528
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 322 KELEDIKVSLQRSVSTQKALE-----EDLQIA--TKTICQLTEEKEAQMEAFNKARAAHSFVVTEFETTICSLKELLRTE 394
Cdd:PTZ00121 1529 KAEEAKKADEAKKAEEKKKADelkkaEELKKAeeKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMK 1608
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 395 QQRLEKSEDQlKILTMELQKKSSELEEMTKLTNNKEVELEELKKVLGEKEKLLYENKQFEKIAEELKGTEQELIGLLQAR 474
Cdd:PTZ00121 1609 AEEAKKAEEA-KIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDE 1687
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 475 EKEVHDLEiqltaittSEQYYSKEVKDLKTELENEKLKNIELtshcNKLSLENKELTQETSDMTLELKNQQEDINNNKKR 554
Cdd:PTZ00121 1688 KKAAEALK--------KEAEEAKKAEELKKKEAEEKKKAEEL----KKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEE 1755
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 555 EERMLKQIENLEETETQLRNELEYV-REELKQK----RDEVKCKLDKSEENCNNLRKQVENKNKYIEELQQ-ENKALKKK 628
Cdd:PTZ00121 1756 KKKIAHLKKEEEKKAEEIRKEKEAViEEELDEEdekrRMEVDKKIKDIFDNFANIIEGGKEGNLVINDSKEmEDSAIKEV 1835
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 629 GTAESKQLN----VYEIKVNKLELELESAKQKFGEITDTYQKEIEDKKISEENLLEEVEK 684
Cdd:PTZ00121 1836 ADSKNMQLEeadaFEKHKFNKNNENGEDGNKEADFNKEKDLKEDDEEEIEEADEIEKIDK 1895
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
119-803 |
2.43e-06 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 51.59 E-value: 2.43e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 119 WKVSIEAELKQKENKLQENRKIIEAQRKAIQELQFGNEKV-----SLKLEEGIQENKDLIKENNATRHLcnllKETCARS 193
Cdd:TIGR00606 163 WPLSEGKALKQKFDEIFSATRYIKALETLRQVRQTQGQKVqehqmELKYLKQYKEKACEIRDQITSKEA----QLESSRE 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 194 AEKTKKYEYEREETRQVYMDLN----NNIEKMVTAFEELRVQAENSRLEMHFKLKEDY----EKIQHLEQEYKKEVNDKE 265
Cdd:TIGR00606 239 IVKSYENELDPLKNRLKEIEHNlskiMKLDNEIKALKSRKKQMEKDNSELELKMEKVFqgtdEQLNDLYHNHQRTVREKE 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 266 KQvsllLIQISEKENKMKDLTFLLEESRDKVNQLEEKTKLQSENLKQSIEKQHHLTKELEDIKV--SLQRSVSTQKALEE 343
Cdd:TIGR00606 319 RE----LVDCQRELEKLNKERRLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQSLATRLEldGFERGPFSERQIKN 394
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 344 DLQIATKTICQLTEEKEAQMEAFNKARAAHSFVVTEFETTICSLKELLRTEQQRLEKSEDQLKILTMELQKKSSELEEMT 423
Cdd:TIGR00606 395 FHTLVIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDRIL 474
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 424 KLTnnkevelEELKKVLGEKEKLlYENKQFEKIAEELKGTEQELIGLLQAREKEVHDLE---------IQLTAITTSEQY 494
Cdd:TIGR00606 475 ELD-------QELRKAERELSKA-EKNSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEqlnhhtttrTQMEMLTKDKMD 546
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 495 YSKEVKDLKTELENEKLKNI-------ELTSHCNKLSLENKELTQETSDMTLELKNQQEDINNNKKREERMLKQIENLEE 567
Cdd:TIGR00606 547 KDEQIRKIKSRHSDELTSLLgyfpnkkQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYED 626
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 568 ------TETQLRNELEYVREELKQKRDEVK--------------------------CKLD-KSEENCNNLRKQVENKNK- 613
Cdd:TIGR00606 627 klfdvcGSQDEESDLERLKEEIEKSSKQRAmlagatavysqfitqltdenqsccpvCQRVfQTEAELQEFISDLQSKLRl 706
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 614 YIEELQQENKALKKKGTAESKQLNVYEIKVNKLEL------ELESAKQKFGEITDTYQKEIEDKKISEENLLEEVEKAKV 687
Cdd:TIGR00606 707 APDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLkekeipELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKV 786
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 688 IADEAVKLQ------KEIDKRCQHKIAEM--------VALMEKHKDQYDKIIEERDSELGLYKSKEQEQSSLRASLETEL 753
Cdd:TIGR00606 787 CLTDVTIMErfqmelKDVERKIAQQAAKLqgsdldrtVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKT 866
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|
gi 1622830651 754 SNLKTELLSVKKQLEIEREEKEKLKREAKENTATLKEKKDKKTQTSLLET 803
Cdd:TIGR00606 867 NELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLET 916
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
289-625 |
3.45e-06 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 50.66 E-value: 3.45e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 289 LEESRDKVNQLEEKTKLQSENLKQSIEKQHhltKELEDIKVSLQRSVSTQKALEEDLQIATKTICQLTEEKEAQMEAFNK 368
Cdd:pfam07888 46 LLQAQEAANRQREKEKERYKRDREQWERQR---RELESRVAELKEELRQSREKHEELEEKYKELSASSEELSEEKDALLA 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 369 ARAAHSFVVTEFETTICSLKELLRTEQQRLEKSEDQLKILTMELQKKSSELEEMTKLTNNKEVELEELKKVLGEKEKLLY 448
Cdd:pfam07888 123 QRAAHEARIRELEEDIKTLTQRVLERETELERMKERAKKAGAQRKEEEAERKQLQAKLQQTEEELRSLSKEFQELRNSLA 202
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 449 ENKQFEKIAEELKGTEQELIGLLQAREKEVHDLEIQLTAITTSEQYYSKEVKDLKTELENEKLKNIELTSHCNKLSLENK 528
Cdd:pfam07888 203 QRDTQVLQLQDTITTLTQKLTTAHRKEAENEALLEELRSLQERLNASERKVEGLGEELSSMAAQRDRTQAELHQARLQAA 282
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 529 ELTQETSDMTLELK-----------NQQEDINNNKKREERMLKQIENLEETETQLRNELEYVREELKQKRDEVKCKLDKS 597
Cdd:pfam07888 283 QLTLQLADASLALRegrarwaqereTLQQSAEADKDRIEKLSAELQRLEERLQEERMEREKLEVELGREKDCNRVQLSES 362
|
330 340
....*....|....*....|....*...
gi 1622830651 598 EENCNNLRKQVENKNKYIEELQQENKAL 625
Cdd:pfam07888 363 RRELQELKASLRVAQKEKEQLQAEKQEL 390
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
583-806 |
4.27e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 50.83 E-value: 4.27e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 583 LKQKRDEVKCKLDKSEENC--------------NNLRKQVENKNKYIE-------------------------ELQQENK 623
Cdd:TIGR02168 170 YKERRKETERKLERTRENLdrledilnelerqlKSLERQAEKAERYKElkaelrelelallvlrleelreeleELQEELK 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 624 ALKKKGTAESKQLNVYEIKVNKLELELESAKQKFGEITDTYQKEIEDKKISEENLLEEVEKAKVIADEAVKLQKEIDKRC 703
Cdd:TIGR02168 250 EAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELE 329
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 704 QHKI--AEMVALMEKHKDQYDKIIEERDSELGLYKSKEQEQSSLRASLETELSNLKTELLSVKKQL-----EIER----- 771
Cdd:TIGR02168 330 SKLDelAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIaslnnEIERlearl 409
|
250 260 270
....*....|....*....|....*....|....*....
gi 1622830651 772 ----EEKEKLKREAKENTATLKEKKDKKTQTSLLETPEM 806
Cdd:TIGR02168 410 erleDRRERLQQEIEELLKKLEEAELKELQAELEELEEE 448
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
386-780 |
4.45e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 50.89 E-value: 4.45e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 386 SLKELLRTEQQRLEKSEDQLKILTMELQKKSSELEEMTkltNNKEVELEELKKVLGEKEKLL---------YENKQFEKI 456
Cdd:pfam15921 128 AMADIRRRESQSQEDLRNQLQNTVHELEAAKCLKEDML---EDSNTQIEQLRKMMLSHEGVLqeirsilvdFEEASGKKI 204
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 457 AEELKGTEQELIGLLQAREKEVHDLEIQLTAITTSEQYYSKEVKDLKTELENEKlkNIELTSHCNKLS-------LENKE 529
Cdd:pfam15921 205 YEHDSMSTMHFRSLGSAISKILRELDTEISYLKGRIFPVEDQLEALKSESQNKI--ELLLQQHQDRIEqliseheVEITG 282
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 530 LTQETSDMTLE---LKNQQEDINNNKKREERM-LKQIENLEETETQLRNELeyvreelkqkRDEVKCKLDKSEEncnnLR 605
Cdd:pfam15921 283 LTEKASSARSQansIQSQLEIIQEQARNQNSMyMRQLSDLESTVSQLRSEL----------REAKRMYEDKIEE----LE 348
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 606 KQVENKNKYIEELQQENKALKKKGTAESKQLNVYEIKVNKLELELESAKQKFGEITDtyqkEIEDKKISEENLLEEVEKA 685
Cdd:pfam15921 349 KQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWD----RDTGNSITIDHLRRELDDR 424
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 686 KVIADEAVKLQKEIDKRCQ-----------------HKIAEMVALMEKHKDQYDKIIEERDSELGLYKSKEQEQSSLRAS 748
Cdd:pfam15921 425 NMEVQRLEALLKAMKSECQgqmerqmaaiqgkneslEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTAS 504
|
410 420 430
....*....|....*....|....*....|....*
gi 1622830651 749 L---ETELSNLKTELLSVKKQLEIEREEKEKLKRE 780
Cdd:pfam15921 505 LqekERAIEATNAEITKLRSRVDLKLQELQHLKNE 539
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
377-773 |
1.12e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 49.68 E-value: 1.12e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 377 VTEFETTICSLKELLRTEQQRLEKSEDQLKILTMELQKKSSELEEMTKLTN-NKEVELEELKKVLGEKEKLLYENKQFEK 455
Cdd:TIGR02169 165 VAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQAlLKEKREYEGYELLKEKEALERQKEAIER 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 456 IAEELKGTEQELIGLLQAREKEVHDLEIQLTAITtseqyysKEVKDLKTELENEKLKNI-ELTSHCNKLSLENKELTQET 534
Cdd:TIGR02169 245 QLASLEEELEKLTEEISELEKRLEEIEQLLEELN-------KKIKDLGEEEQLRVKEKIgELEAEIASLERSIAEKEREL 317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 535 SDMTLELKNQQEDINnnkkreeRMLKQIENLEETETQLRNELEYVREELKQKRDEVkckldkseencNNLRKQvenknky 614
Cdd:TIGR02169 318 EDAEERLAKLEAEID-------KLLAEIEELEREIEEERKRRDKLTEEYAELKEEL-----------EDLRAE------- 372
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 615 IEELQQENKALKKkgtaeskqlnvyeiKVNKLELELESAKQKFGEITDTYQKEIEDKKISEENLLEEVEKAKVIADEAVK 694
Cdd:TIGR02169 373 LEEVDKEFAETRD--------------ELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINE 438
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 695 LQKEID------KRCQHKIAEMVALMEKHKDQYDKIIEERDselglykskeqeqsslraSLETELSNLKTELLSVKKQLE 768
Cdd:TIGR02169 439 LEEEKEdkaleiKKQEWKLEQLAADLSKYEQELYDLKEEYD------------------RVEKELSKLQRELAEAEAQAR 500
|
....*
gi 1622830651 769 IEREE 773
Cdd:TIGR02169 501 ASEER 505
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
387-803 |
1.58e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 48.91 E-value: 1.58e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 387 LKELLRTEQQRLEKSEDQLKILTMELQKKSSELEEMTKLTNnkevELEELKKVLGEKEKLLYENKQFEKIAEELKGTEQE 466
Cdd:PRK03918 191 IEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVK----ELEELKEEIEELEKELESLEGSKRKLEEKIRELEE 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 467 LIGLLQAREKEVHDLEIQLTAITTSEQYYSK------EVKDLKTELENEKLKNIELTSHCNKLSLENKELTQETSDMTLE 540
Cdd:PRK03918 267 RIEELKKEIEELEEKVKELKELKEKAEEYIKlsefyeEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKK 346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 541 LKNQQEDINNNKKRE---ERMLKQIENLEETETQLRN----ELEYVREELKQKRDEVKCKLDKSEENCNNLRKQVENKNK 613
Cdd:PRK03918 347 LKELEKRLEELEERHelyEEAKAKKEELERLKKRLTGltpeKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKK 426
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 614 YIEELqqenKALKKKGTAESKQLNVYEIK--VNKLELELESAKQKFGEITDTYQKEIEDKKISEENLLEEVE--KAKVIA 689
Cdd:PRK03918 427 AIEEL----KKAKGKCPVCGRELTEEHRKelLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESEliKLKELA 502
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 690 DEAVKLQKEIDKRCQHKIAEMVALMEKHKDQYDKI------IEERDSELGLYKSKEQEQSSLRASLETELSNLKTELL-- 761
Cdd:PRK03918 503 EQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLkgeiksLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEel 582
|
410 420 430 440
....*....|....*....|....*....|....*....|....
gi 1622830651 762 --SVKKQLEIEREEKEKLKREAKENTATLKEKKDKKTQTSLLET 803
Cdd:PRK03918 583 gfESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEE 626
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
224-805 |
1.61e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 48.98 E-value: 1.61e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 224 AFEELRVQAENSRLEMHFKLKEDY---EKIQHLEQEYKKEVNDKEKQVSLLLIQISEKENKMKDLTFLLEESR--DKVNQ 298
Cdd:PTZ00121 1092 ATEEAFGKAEEAKKTETGKAEEARkaeEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIARKAEDARkaEEARK 1171
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 299 LEEKTKLQSENLKQSIEKQHHLTKELEDIKVSLQRSVSTQKALEEDLQIATKTICQLTEEKEAQMEAFNKARAAHSFVVT 378
Cdd:PTZ00121 1172 AEDAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNN 1251
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 379 EFETTICSLKELLRTEQQRLEKSEDQLKILTMELQKKSSELEEMTKLTNNKEVEleELKKVLGEKEKLLYENKQFE---K 455
Cdd:PTZ00121 1252 EEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKAD--EAKKKAEEAKKADEAKKKAEeakK 1329
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 456 IAEELKGTEQEligllQAREKEVHDLEIQLTAITTSEQYYSKEVKDLKTELENEKLKNIELTSHCNKLSLENKELTQETS 535
Cdd:PTZ00121 1330 KADAAKKKAEE-----AKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDK 1404
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 536 DMTLELKNQQED----------INNNKKREERMLKQIENLEETETQLRNELEYVREELKQKRDEVKcKLDKSEENCNNLR 605
Cdd:PTZ00121 1405 KKADELKKAAAAkkkadeakkkAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAK-KADEAKKKAEEAK 1483
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 606 KQVENKNKyIEELQQENKALKKKGTAESKQLNVYEIKVNKLELELESAKQKfgEITDTYQKEIEDKKISEENLLEEVEKA 685
Cdd:PTZ00121 1484 KADEAKKK-AEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEA--KKADEAKKAEEKKKADELKKAEELKKA 1560
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 686 KVIADEAVKLQKEIDKRCQHKIAEMVALMEKHKDQYDKIIEERDSELGLYKSKEQEQSSLRASLETELSNLKTELLSVKK 765
Cdd:PTZ00121 1561 EEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKK 1640
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*...
gi 1622830651 766 QLEIE----------------REEKEKLKREAKENTA--TLKEKKDKKTQTSLLETPE 805
Cdd:PTZ00121 1641 KEAEEkkkaeelkkaeeenkiKAAEEAKKAEEDKKKAeeAKKAEEDEKKAAEALKKEA 1698
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
250-683 |
1.68e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 48.61 E-value: 1.68e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 250 IQHLEQEYKKEVNDKEKQVSLLLIQISEKENKMKDLTFLLEESRDKVNQLEEKTKlQSENLKQSIEKQHHLTKELEDIKv 329
Cdd:COG4717 48 LERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEE-ELEELEAELEELREELEKLEKLL- 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 330 SLQRSVSTQKALEEDLQIATKTICQLTEEKEAQMEAFNKARAAhsfvvtefETTICSLKELLRTEQQRL-EKSEDQLKIL 408
Cdd:COG4717 126 QLLPLYQELEALEAELAELPERLEELEERLEELRELEEELEEL--------EAELAELQEELEELLEQLsLATEEELQDL 197
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 409 TMELQKKSSELEEMTKLTNNKEVELEELKKVLGEKEKLLYENKQFEKIAEELKGTEQE-LIGLLQAREKEVHDLEIQLTA 487
Cdd:COG4717 198 AEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAaALLALLGLGGSLLSLILTIAG 277
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 488 ITT---------------SEQYYSKEVKDLKTELENEKLKNIELTSHCNKLSLENKELTQETSDMTLELKNQQEDINNNK 552
Cdd:COG4717 278 VLFlvlgllallflllarEKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAE 357
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 553 KREERMlkQIENLEETETQLRNELE-------YVREELKQKRDEVKCKLDKSEENCNNLRKQVENKNKYIEELQQENKAL 625
Cdd:COG4717 358 ELEEEL--QLEELEQEIAALLAEAGvedeeelRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEELEEELE 435
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*...
gi 1622830651 626 KKKgtaesKQLNVYEIKVNKLELELESAKQKFGEITDtyQKEIEDKKISEENLLEEVE 683
Cdd:COG4717 436 ELE-----EELEELEEELEELREELAELEAELEQLEE--DGELAELLQELEELKAELR 486
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
94-461 |
2.25e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 48.51 E-value: 2.25e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 94 SDLENSEALSRVYSKLYKEAEKIKKWKVSIEA---ELKQKENKLQENRKIIEAQRKAIQELQFGNEKVSLKLEEGIQENK 170
Cdd:TIGR02168 671 SILERRREIEELEEKIEELEEKIAELEKALAElrkELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIA 750
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 171 DLIKENNATRHLCNLLKETCARSAEKTKKYEYEREETRQVYMDLNNNIEKMVTAFEELRVQAENsrlemhfkLKEDYEKI 250
Cdd:TIGR02168 751 QLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTL--------LNEEAANL 822
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 251 QHLEQEYKKEVNDKEKQVSLLLIQISEKENKMKDLTFLLEESRDKVNQLEEKTKLQSENLKQSIEKQHHLTKELEDIKVS 330
Cdd:TIGR02168 823 RERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEE 902
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 331 LQRSVSTQKALEEDLQIATKTICQLtEEKEAQMEAfnkaraahsfvvtEFETTICSLKELLRTEQQRLEKSEDQLKILTM 410
Cdd:TIGR02168 903 LRELESKRSELRRELEELREKLAQL-ELRLEGLEV-------------RIDNLQERLSEEYSLTLEEAEALENKIEDDEE 968
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|.
gi 1622830651 411 ELQKKSSELEEmtKLTNNKEVELEELKKVLGEKEKLLYENKQFEKIAEELK 461
Cdd:TIGR02168 969 EARRRLKRLEN--KIKELGPVNLAAIEEYEELKERYDFLTAQKEDLTEAKE 1017
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
125-783 |
3.45e-05 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 48.12 E-value: 3.45e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 125 AELKQKENKLQENRKIIEAQRKAIQE-LQFGNEKVSLKLEEGIQENKDLIKENNATRHLCNLLKETCARSAEKTKKYEYE 203
Cdd:TIGR00606 415 ADLQSKERLKQEQADEIRDEKKGLGRtIELKKEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKAERELSKAEKNS 494
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 204 REETRQVYMDLNNNiEKMVTAFEELRVQAENSRLEMHFKLKEDYEKIQHLEQEYKKEVNDKEKQVSLLLIQISEKENKMK 283
Cdd:TIGR00606 495 LTETLKKEVKSLQN-EKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLGYFPNKK 573
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 284 DLTFLLEESRDKVNQLEEKTKLQSENLKQSIEKQHHLTKELEdiKVSLQRSVSTQKALE----EDLQIATKTICQLTEEK 359
Cdd:TIGR00606 574 QLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELE--SKEEQLSSYEDKLFDvcgsQDEESDLERLKEEIEKS 651
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 360 EAQMEAFNKARAAHSFVVTEFET--------------TICSLKELLRTEQQRLEKSEDQLKILTMELQKKSSELEEMTKL 425
Cdd:TIGR00606 652 SKQRAMLAGATAVYSQFITQLTDenqsccpvcqrvfqTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGL 731
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 426 TNNKEVELEELKKVLGE-KEKLLYENKQFEKIAEELKGTEQELiGLLQAREKEVHDLeiqLTAITTSEQYYsKEVKDLKT 504
Cdd:TIGR00606 732 APGRQSIIDLKEKEIPElRNKLQKVNRDIQRLKNDIEEQETLL-GTIMPEEESAKVC---LTDVTIMERFQ-MELKDVER 806
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 505 ELENEKLKnieltSHCNKLSLENKELTQETSDMTLELKNQQEDINNNKKREERMLKQIENLEETETQLRNELEYVREELK 584
Cdd:TIGR00606 807 KIAQQAAK-----LQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQ 881
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 585 QKR--DEVKCKLDKSEENCNNLRKQVENKN----KYIEELQQENKALKKKGTAESKqlnVYEIKVNKLELELESAKQKFG 658
Cdd:TIGR00606 882 RRQqfEEQLVELSTEVQSLIREIKDAKEQDspleTFLEKDQQEKEELISSKETSNK---KAQDKVNDIKEKVKNIHGYMK 958
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 659 EITDTYQKEIEDKKISEENlleEVEKAKVIADEAVKLQKEIDK------------RCQHKIAEMVALMEKHKDQYDKIIE 726
Cdd:TIGR00606 959 DIENKIQDGKDDYLKQKET---ELNTVNAQLEECEKHQEKINEdmrlmrqdidtqKIQERWLQDNLTLRKRENELKEVEE 1035
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*...
gi 1622830651 727 ERDSELG-LYKSKEQEQSSLRASLETELSNLKTELLSVKKQLEIEREEKEKLKREAKE 783
Cdd:TIGR00606 1036 ELKQHLKeMGQMQVLQMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKELRE 1093
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
108-760 |
4.52e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 47.62 E-value: 4.52e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 108 KLYKEAEKIKKWKvSIEAELKQKENKLQENRKiieaqRKAIQELQfgnekvslKLEEGIQENKDLIKENNATRhlcnllk 187
Cdd:COG1196 204 PLERQAEKAERYR-ELKEELKELEAELLLLKL-----RELEAELE--------ELEAELEELEAELEELEAEL------- 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 188 etcarsAEKTKKYEYEREETRQvymdlnnniekmvtafEELRVQAENSRlemhfklkedyekiqhlEQEYKKEVNDKEKQ 267
Cdd:COG1196 263 ------AELEAELEELRLELEE----------------LELELEEAQAE-----------------EYELLAELARLEQD 303
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 268 VSLLLIQISEKENKmkdltflLEESRDKVNQLEEKTKLQSENLKQSIEKQHHLTKELEDIKVSLQRSVSTQKALEEDLQi 347
Cdd:COG1196 304 IARLEERRRELEER-------LEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELA- 375
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 348 atkticqlteEKEAQMEAFNKARAAHSFVVTEFETTICSLKELLRTEQQRLEKSEDQLKILTMELQKKSSELEEmtkltn 427
Cdd:COG1196 376 ----------EAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEE------ 439
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 428 NKEVELEELKKVLGEKEKLLYENKQFEKIAEELKGTEQELIGLLQAREKEVHDLEIQLTAITTSEQYYSkevkDLKTELE 507
Cdd:COG1196 440 EEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLE----GVKAALL 515
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 508 NEKLKNIELTSHCNKLSLENKELTQETSDMTLELKNQQEDINNNKKREERMLKQIEN------LEETETQLRNELEYVRE 581
Cdd:COG1196 516 LAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGratflpLDKIRARAALAAALARG 595
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 582 ELKQKRDEVKCKLDKSEENCNNLRKQV----------ENKNKYIEELQQENKALKKKGTAESKQLNVYEIKVNKLELELE 651
Cdd:COG1196 596 AIGAAVDLVASDLREADARYYVLGDTLlgrtlvaarlEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALL 675
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 652 SAKQKfgeitdtyQKEIEDKKISEENLLEEVEKAKVIADEAVKLQKEIDKRCQHKIAEMVALMEKHKDQYDKIIEERDSE 731
Cdd:COG1196 676 EAEAE--------LEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEEL 747
|
650 660
....*....|....*....|....*....
gi 1622830651 732 LGLYKSKEQEQSSLRASLETELSNLKTEL 760
Cdd:COG1196 748 LEEEALEELPEPPDLEELERELERLEREI 776
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
577-802 |
5.22e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 47.32 E-value: 5.22e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 577 EYVREELKQKRDEVKCKLDKSEENCNNLRKQVENKNKYIEELQQENK--ALKKKGTAESKQLNVYEIKVNKLELELESAK 654
Cdd:COG3206 160 AYLEQNLELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKNGlvDLSEEAKLLLQQLSELESQLAEARAELAEAE 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 655 QKFgeitDTYQKEIEDKKISEENLLEEVEKAKVIADEAvKLQKEIDKrcqhkiaemvaLMEKHKDQYDKIIEERDSELGL 734
Cdd:COG3206 240 ARL----AALRAQLGSGPDALPELLQSPVIQQLRAQLA-ELEAELAE-----------LSARYTPNHPDVIALRAQIAAL 303
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1622830651 735 YKSKEQEQSSLRASLETELSNLKTELLSVKKQLEIEREEKEK----------LKREAKENTATLKEKKDKKTQTSLLE 802
Cdd:COG3206 304 RAQLQQEAQRILASLEAELEALQAREASLQAQLAQLEARLAElpeleaelrrLEREVEVARELYESLLQRLEEARLAE 381
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
236-778 |
5.87e-05 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 47.04 E-value: 5.87e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 236 RLEMHFKLKEDYEKIQHLEQEYKKEVNDKEKQVSLLLIQISEKENKMKDLTFLLEESRDKVNQLEEKTKLQSEN---LKQ 312
Cdd:pfam05557 4 LIESKARLSQLQNEKKQMELEHKRARIELEKKASALKRQLDRESDRNQELQKRIRLLEKREAEAEEALREQAELnrlKKK 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 313 SIEKQHHLTKELEDIKVSLQRSVSTQKALEEDLQIATKTICQLTEEKEAQMEAFNKARAAHSFVVTEFEtticSLKELLR 392
Cdd:pfam05557 84 YLEALNKKLNEKESQLADAREVISCLKNELSELRRQIQRAELELQSTNSELEELQERLDLLKAKASEAE----QLRQNLE 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 393 TEQQRLEKSEDQLKILTMELQKKSSELEEmtklTNNKEVELEELKKVLGEKEKLLYENKQFEKIA-------EELKGTEQ 465
Cdd:pfam05557 160 KQQSSLAEAEQRIKELEFEIQSQEQDSEI----VKNSKSELARIPELEKELERLREHNKHLNENIenklllkEEVEDLKR 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 466 ELIGLLQAREKEVhDLEIQLTAITTSEQYYSKEVK----------DLKTELENEKLKNIELTSHCNKLSLENKELTQETS 535
Cdd:pfam05557 236 KLEREEKYREEAA-TLELEKEKLEQELQSWVKLAQdtglnlrspeDLSRRIEQLQQREIVLKEENSSLTSSARQLEKARR 314
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 536 DMTLELKNQQEDINNNKKREERMLKQIENLEETETQLRNELEYVREELKQKRDEVKckldkSEENCNNLRKQVENKNKYI 615
Cdd:pfam05557 315 ELEQELAQYLKKIEDLNKKLKRHKALVRRLQRRVLLLTKERDGYRAILESYDKELT-----MSNYSPQLLERIEEAEDMT 389
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 616 EELQQENKALKKKGTAESKQLNVYEIKVNKLELELESAKQK--------FGEITDTYQKEIEDKKISEENLLEEVEKAKV 687
Cdd:pfam05557 390 QKMQAHNEEMEAQLSVAEEELGGYKQQAQTLERELQALRQQesladpsySKEEVDSLRRKLETLELERQRLREQKNELEM 469
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 688 IAdEAVKLQKEID----KRCQHKIAEMVALMEKHKDQYDKIIEERDSELGLYKSKEQEQSSLRASLETELSNLKTELLSV 763
Cdd:pfam05557 470 EL-ERRCLQGDYDpkktKVLHLSMNPAAEAYQQRKNQLEKLQAEIERLKRLLKKLEDDLEQVLRLPETTSTMNFKEVLDL 548
|
570
....*....|....*
gi 1622830651 764 KKQLEIEREEKEKLK 778
Cdd:pfam05557 549 RKELESAELKNQRLK 563
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
123-683 |
6.31e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 46.96 E-value: 6.31e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 123 IEAELKQKENK-LQENRKIIEAQRKAIQELQFGNEKVSLKLEEGIQENKDLIKENNATRHLCNLLKETCARSAEKTKKYE 201
Cdd:PRK02224 192 LKAQIEEKEEKdLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELETLEAEIEDLRETIAETE 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 202 YEREETRQVYMDLNNNIEKMVTAFEELRVQAENSRLEmhfklKEDYEKIQHLEQEYKKEVNDKEKQVSLlliQISEKENK 281
Cdd:PRK02224 272 REREELAEEVRDLRERLEELEEERDDLLAEAGLDDAD-----AEAVEARREELEDRDEELRDRLEECRV---AAQAHNEE 343
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 282 MKDLtflleesRDKVNQLEEktklQSENLKqsiEKQHHLTKELEDIKVSLQRSVSTQKALEEDLQIATKTICQLTEEKEA 361
Cdd:PRK02224 344 AESL-------REDADDLEE----RAEELR---EEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGN 409
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 362 QMEAFNKARAAHSFV---VTEFETTICSLKELLRTEQQRLEKS---------EDQLKILTMElqKKSSELEEMTKLTNNK 429
Cdd:PRK02224 410 AEDFLEELREERDELrerEAELEATLRTARERVEEAEALLEAGkcpecgqpvEGSPHVETIE--EDRERVEELEAELEDL 487
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 430 EVELEELKKVLGEKEKLLYENKQFEKIAEELKGTEQeligLLQAREKEVHDLEIQLTAIttseqyySKEVKDLKTELENE 509
Cdd:PRK02224 488 EEEVEEVEERLERAEDLVEAEDRIERLEERREDLEE----LIAERRETIEEKRERAEEL-------RERAAELEAEAEEK 556
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 510 KLKNIELTSHCNKLSLENKELTQETSDMTLELKN------QQEDINNNKKREERMLKQIENLEETETQLRNELEYVREEL 583
Cdd:PRK02224 557 REAAAEAEEEAEEAREEVAELNSKLAELKERIESlerirtLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERK 636
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 584 KQKRDEVkckldkSEENCNNLRKQVENKNKYIEELQQENKALKKKGTAESKQLNVYEikvNKLElELESAKQKfgeitdt 663
Cdd:PRK02224 637 RELEAEF------DEARIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVE---NELE-ELEELRER------- 699
|
570 580
....*....|....*....|
gi 1622830651 664 yQKEIEDKKISEENLLEEVE 683
Cdd:PRK02224 700 -REALENRVEALEALYDEAE 718
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
354-591 |
6.74e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.30 E-value: 6.74e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 354 QLTEEKEAQMEAFNKARAAHsfvvtefETTICSLKELLRTEQQRLEKSEDQLKILTMELQKKSSELEEMTKLTNNKEVEL 433
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAEL-------EKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEI 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 434 EELKKVLGEKEKLLYENKQfekiAEELKGTEQELIGLLQAreKEVHDLEIQLTAITTSEQYYSKEVKDLKTELENEKLKN 513
Cdd:COG4942 93 AELRAELEAQKEELAELLR----ALYRLGRQPPLALLLSP--EDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALR 166
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1622830651 514 IELTSHCNKLSLENKELTQETSDMTLELKNQQEDINNNKKREERMLKQIENLEETETQLRNELEYVREELKQKRDEVK 591
Cdd:COG4942 167 AELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTP 244
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
482-732 |
7.84e-05 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 46.97 E-value: 7.84e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 482 EIQLTAITTSEQYYSKEVKDLKTELENEKLKNIELTSHCNKLSLENKELTQETSDMTlELKNQ---QEDINNNKKREERM 558
Cdd:TIGR01612 733 ELLDIIVEIKKHIHGEINKDLNKILEDFKNKEKELSNKINDYAKEKDELNKYKSKIS-EIKNHyndQINIDNIKDEDAKQ 811
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 559 -LKQIENLEETETQLRNELEYVREELKQKRDEVKCKLDKSEENCNNLRKQVENKNKYIEELQQenkalKKKGTAESKQLN 637
Cdd:TIGR01612 812 nYDKSKEYIKTISIKEDEIFKIINEMKFMKDDFLNKVDKFINFENNCKEKIDSEHEQFAELTN-----KIKAEISDDKLN 886
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 638 VYEIKVNkleleleSAKQKFGEITDTYQKEIED----KKISE-----ENLLEEVEKAKviaDEAVKLQKEIDKRCQhKIA 708
Cdd:TIGR01612 887 DYEKKFN-------DSKSLINEINKSIEEEYQNintlKKVDEyikicENTKESIEKFH---NKQNILKEILNKNID-TIK 955
|
250 260
....*....|....*....|....
gi 1622830651 709 EMVALMEKHKDQYDKIIEERDSEL 732
Cdd:TIGR01612 956 ESNLIEKSYKDKFDNTLIDKINEL 979
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
86-587 |
1.01e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 46.50 E-value: 1.01e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 86 HYQEGLKDSDLENSEALSRVYSKLYKEAEKIkkwkvsieAELKQKENKLQENRKIIEAQRKAIQELQFGNEKVSLK-LEE 164
Cdd:TIGR00618 382 HTLQQQKTTLTQKLQSLCKELDILQREQATI--------DTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCtAQC 453
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 165 GIQENKDLIKENNATRHLCNLL--KETCARSAEKTKKYEYER-----EETRQVYMDLNNNIEKMVTAFEELRVQAENSRL 237
Cdd:TIGR00618 454 EKLEKIHLQESAQSLKEREQQLqtKEQIHLQETRKKAVVLARllelqEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQRG 533
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 238 EM-HFKLKEDYEKIQHL-------EQEYKKEVNDKEKQVSLLLIQISEKENKMKDLTFLLEESRDKVN-QLEEKTKLQSE 308
Cdd:TIGR00618 534 EQtYAQLETSEEDVYHQltserkqRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEkLSEAEDMLACE 613
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 309 NLKQSIEKQHHLTK-----ELEDIKVSLQRSVSTQKALEEDL-----QIATKTICQLTEEKEAQMEAFNKARAAHSFVVT 378
Cdd:TIGR00618 614 QHALLRKLQPEQDLqdvrlHLQQCSQELALKLTALHALQLTLtqervREHALSIRVLPKELLASRQLALQKMQSEKEQLT 693
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 379 EFETTICSLKELLRTEQQRLEKSEDQLKILTMELQKKSSELEEMTKLTNNKEVELEELKKVLGEKEKLLYENKQFEKIAE 458
Cdd:TIGR00618 694 YWKEMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKARTEAHFNNNEEVTAA 773
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 459 ELKGTE-QELIGLLQAREKEVHDLEIQLTAITTSEQYYSKEVKDLKTeLENEKLKNiELTSHCNKLSLENKELtqetsdm 537
Cdd:TIGR00618 774 LQTGAElSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILN-LQCETLVQ-EEEQFLSRLEEKSATL------- 844
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|
gi 1622830651 538 tLELKNQQEDINNNKKREERMLKQIENLeeteTQLRNELEYVREELKQKR 587
Cdd:TIGR00618 845 -GEITHQLLKYEECSKQLAQLTQEQAKI----IQLSDKLNGINQIKIQFD 889
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
376-617 |
1.06e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.45 E-value: 1.06e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 376 VVTEFETTICSLKELLRTEQQrLEKSEDQLKILTmELQKKSSELEEMTKLTNNKEVELEELKKVLGEKEKLLYENKQfEK 455
Cdd:COG4913 223 TFEAADALVEHFDDLERAHEA-LEDAREQIELLE-PIRELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAEL-EE 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 456 IAEELKGTEQElIGLLQAREKEVHDLEIQLTAittseQYYS---KEVKDLKTELENeklknieLTSHCNKLSLENKELTQ 532
Cdd:COG4913 300 LRAELARLEAE-LERLEARLDALREELDELEA-----QIRGnggDRLEQLEREIER-------LERELEERERRRARLEA 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 533 ETSDMTLELKNQQEDINNNKKREERMLKQIENLEETETQLRNELEYVREELKQKRDEVKCKLDKSEENCNNLRKQVENKN 612
Cdd:COG4913 367 LLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLALR 446
|
....*
gi 1622830651 613 KYIEE 617
Cdd:COG4913 447 DALAE 451
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
552-805 |
1.15e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 46.08 E-value: 1.15e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 552 KKREERMLKqienLEETETQLrNELEYVREELKQKRDEvkckldkseencnnLRKQVENKNKYIEeLQQENKALKKKGTA 631
Cdd:COG1196 172 ERKEEAERK----LEATEENL-ERLEDILGELERQLEP--------------LERQAEKAERYRE-LKEELKELEAELLL 231
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 632 -----ESKQLNVYEIKVNKLELELESAKQKFGEItdtyQKEIEDKKISEENLLEEVEKAKVIADEAVKLQKEIDKRCQHK 706
Cdd:COG1196 232 lklreLEAELEELEAELEELEAELEELEAELAEL----EAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARL 307
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 707 IAEMVALmEKHKDQYDKIIEERDSELGLYKSKEQEQSSLRASLETELSNLKTELLSVKKQL-EIEREEKEKLKREAKENT 785
Cdd:COG1196 308 EERRREL-EERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALlEAEAELAEAEEELEELAE 386
|
250 260
....*....|....*....|
gi 1622830651 786 ATLKEKKDKKTQTSLLETPE 805
Cdd:COG1196 387 ELLEALRAAAELAAQLEELE 406
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
528-701 |
1.35e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 45.21 E-value: 1.35e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 528 KELTQETSDMTLELKNQQEDINNNKKREERMLKQIENLEETETQLRNELEYVREELKQKRDEVKCKLDKSEEN------- 600
Cdd:COG3883 26 SELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARALYRSggsvsyl 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 601 ---------------CNNLRKQVENKNKYIEELQQENKALKKKGTAESKQLNVYEIKVNKLELELESAKQKFGEITDTYQ 665
Cdd:COG3883 106 dvllgsesfsdfldrLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEAQQAEQEALLA 185
|
170 180 190
....*....|....*....|....*....|....*.
gi 1622830651 666 kEIEDKKISEENLLEEVEKAKVIADEAVKLQKEIDK 701
Cdd:COG3883 186 -QLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAA 220
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
277-791 |
1.58e-04 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 45.94 E-value: 1.58e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 277 EKENKMKDLTFLLEESRDKVNQLE-EKTKLQS--ENLKQSIEKQHHLTKELEDIKVSLQRSVstqKALEEDLQIAtktic 353
Cdd:pfam01576 72 ELEEILHELESRLEEEEERSQQLQnEKKKMQQhiQDLEEQLDEEEAARQKLQLEKVTTEAKI---KKLEEDILLL----- 143
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 354 qlteekEAQMEAFNKARAAHSFVVTEFETTICSLKELLRTEQQRLEKSEDQLKILTMELQKKSSELEEMTKLTNNKEVEL 433
Cdd:pfam01576 144 ------EDQNSKLSKERKLLEERISEFTSNLAEEEEKAKSLSKLKNKHEAMISDLEERLKKEEKGRQELEKAKRKLEGES 217
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 434 EELKKVLGEKEKllyenkQFEKIAEELKGTEQELIGLLQAREKEVHDLEIQLTAITTSEQYYSkevkDLKTELENEKLKN 513
Cdd:pfam01576 218 TDLQEQIAELQA------QIAELRAQLAKKEEELQAALARLEEETAQKNNALKKIRELEAQIS----ELQEDLESERAAR 287
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 514 IELTSHCNKLSLENKELTQETSDmTLELKNQQEDINNNKKREERMLKQieNLEETETQLRNELEYVREELKQKRDEVKCK 593
Cdd:pfam01576 288 NKAEKQRRDLGEELEALKTELED-TLDTTAAQQELRSKREQEVTELKK--ALEEETRSHEAQLQEMRQKHTQALEELTEQ 364
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 594 LDKSEENCNNLRKQVENKNKYIEELQQENKALKKKGTAESKQLNVYEIKVNKLEL---ELESAKQKFGEITDTYQKEIEd 670
Cdd:pfam01576 365 LEQAKRNKANLEKAKQALESENAELQAELRTLQQAKQDSEHKRKKLEGQLQELQArlsESERQRAELAEKLSKLQSELE- 443
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 671 kkiSEENLLEEVEKakviadEAVKLQKEIDKRCQ--HKIAEMVALMEKHKDQYDKIIEERDSELGLYKSKEQEQSSLRAS 748
Cdd:pfam01576 444 ---SVSSLLNEAEG------KNIKLSKDVSSLESqlQDTQELLQEETRQKLNLSTRLRQLEDERNSLQEQLEEEEEAKRN 514
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|
gi 1622830651 749 LETELSNLKTELLSVKKQLEIE-------REEKEKLKREAKENTATLKEK 791
Cdd:pfam01576 515 VERQLSTLQAQLSDMKKKLEEDagtlealEEGKKRLQRELEALTQQLEEK 564
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
242-785 |
1.78e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 45.42 E-value: 1.78e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 242 KLKEDYEKIQHLEQEYKKEVNDKEKQVSLLliqiSEKENKMKDLTfLLEESRDKVNQLEEKTKLQSENLKQSIEKQHHLT 321
Cdd:PRK02224 214 ELAELDEEIERYEEQREQARETRDEADEVL----EEHEERREELE-TLEAEIEDLRETIAETEREREELAEEVRDLRERL 288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 322 KELEDIKVSLQRSVSTQKALEEDLQIATKTicqLTEEKEAQMEAFNKARAAhsfvVTEFETTICSLKELLRTEQQRLEKS 401
Cdd:PRK02224 289 EELEEERDDLLAEAGLDDADAEAVEARREE---LEDRDEELRDRLEECRVA----AQAHNEEAESLREDADDLEERAEEL 361
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 402 EDQLKILTMELQKKSSELEEmtkltnnKEVELEELKKVLGEKEKllyenkQFEKIAEELKGTEQELIGLLQAREkEVHDL 481
Cdd:PRK02224 362 REEAAELESELEEAREAVED-------RREEIEELEEEIEELRE------RFGDAPVDLGNAEDFLEELREERD-ELRER 427
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 482 EIQLTAITTSEQYYSKEVKDLkteLENEKL----KNIELTSHCNKLSlENKELTQETSDMTLELKNQQEDinnnkkREER 557
Cdd:PRK02224 428 EAELEATLRTARERVEEAEAL---LEAGKCpecgQPVEGSPHVETIE-EDRERVEELEAELEDLEEEVEE------VEER 497
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 558 mLKQIENLEETETQLrneleyvrEELKQKRDEVKCKLDKSEENCNNLRKQVENKNKYIEELQQEnkalkkkgtAESKqln 637
Cdd:PRK02224 498 -LERAEDLVEAEDRI--------ERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAE---------AEEK--- 556
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 638 vyEIKVNKLELELESAKQKFGEItDTYQKEIEDKKISEENLLEEVEKAKVIADEAVKLQ---KEIDKRCQHKIAEMVALM 714
Cdd:PRK02224 557 --REAAAEAEEEAEEAREEVAEL-NSKLAELKERIESLERIRTLLAAIADAEDEIERLRekrEALAELNDERRERLAEKR 633
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1622830651 715 EKHKDQYDKIIEERDSELglyKSKEQEQSSLRASLETELSNL---KTELLSVKKQLEIEREEKEKLK--REAKENT 785
Cdd:PRK02224 634 ERKRELEAEFDEARIEEA---REDKERAEEYLEQVEEKLDELreeRDDLQAEIGAVENELEELEELRerREALENR 706
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
581-799 |
2.13e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 44.82 E-value: 2.13e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 581 EELKQKRDEVKCKLDKSEENCNNLRKQVENKNKYIEELQQENKALKkkgtAESKQLnvyEIKVNKLELELESAKQKFGEI 660
Cdd:COG3883 19 QAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQ----AEIDKL---QAEIAEAEAEIEERREELGER 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 661 TDTYQKEIEDkkiseENLLEEVEKAKVIAD-----EAVKLQKEIDKRCQHKIAEMVALMEKHKDQYDKIIEERDSELGLY 735
Cdd:COG3883 92 ARALYRSGGS-----VSYLDVLLGSESFSDfldrlSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAEL 166
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1622830651 736 KSKEQEQSSLRASLETELSNLKTELLSVKKQLEIEREEKEKLKREAKENTATLKEKKDKKTQTS 799
Cdd:COG3883 167 EAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAA 230
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
525-627 |
2.24e-04 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 45.23 E-value: 2.24e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 525 LENKELTQETSDMTLELKNQQEDINNNKKREERMLKQIENLEETETQLRNEL-------EYVREELKQKRDEVKCKLDKS 597
Cdd:COG2433 385 LIEKELPEEEPEAEREKEHEERELTEEEEEIRRLEEQVERLEAEVEELEAELeekderiERLERELSEARSEERREIRKD 464
|
90 100 110
....*....|....*....|....*....|....*.
gi 1622830651 598 EE------NCNNLRKQVENKNKYIEELQQENKALKK 627
Cdd:COG2433 465 REisrldrEIERLERELEEERERIEELKRKLERLKE 500
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
407-790 |
2.47e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 44.76 E-value: 2.47e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 407 ILTMELQKKSSELEemTKLTNNKEVELEELKKVLGEKEKLLYENKQFEKIAEELKGTEQELIGLLQAREK---EVHDLEI 483
Cdd:COG4717 46 MLLERLEKEADELF--KPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEElreELEKLEK 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 484 QLTAITTSEQYYS--KEVKDLKTELENEKLKNIELTSHCNKLSLENKELTQETSDMTLELKNQQEDinnNKKREERMLKQ 561
Cdd:COG4717 124 LLQLLPLYQELEAleAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLA---TEEELQDLAEE 200
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 562 IENLEETETQLRNELEYVREELKQKRDEVKcKLDKSEENCNNLRKQVENKNKYI----------EELQQENKALKKKGTA 631
Cdd:COG4717 201 LEELQQRLAELEEELEEAQEELEELEEELE-QLENELEAAALEERLKEARLLLLiaaallallgLGGSLLSLILTIAGVL 279
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 632 ----------------ESKQLNVYEIKVNKLELELESAKQKFGEITDTYQKEIEDKKISEENLLEEVEKAKVIADEAVKL 695
Cdd:COG4717 280 flvlgllallflllarEKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEEL 359
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 696 QKEIDKRCQHKiaEMVALMEKHKDQYDKIIEERDSELGLYKSKEQEQSSLRASLE------------TELSNLKTELLSV 763
Cdd:COG4717 360 EEELQLEELEQ--EIAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEellgeleelleaLDEEELEEELEEL 437
|
410 420
....*....|....*....|....*..
gi 1622830651 764 KKQLEIEREEKEKLKREAKENTATLKE 790
Cdd:COG4717 438 EEELEELEEELEELREELAELEAELEQ 464
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
423-676 |
2.57e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.37 E-value: 2.57e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 423 TKLTNNKEVELEELKKVLGEKEKLLYENK-QFEKIAEELKGTEQELIgllqAREKEVHDLEIQLTAITTSEQYYSKEVKD 501
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKkEEKALLKQLAALERRIA----ALARRIRALEQELAALEAELAELEKEIAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 502 LKTELENEKLKNIELTSHCNKLSLENKeltqetsdmtLELKNQQEDINnnkkREERMLKQIENLEETETQLRNELEYVRE 581
Cdd:COG4942 95 LRAELEAQKEELAELLRALYRLGRQPP----------LALLLSPEDFL----DAVRRLQYLKYLAPARREQAEELRADLA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 582 ELKQKRDEvkckldkseencnnLRKQVENKNKYIEELQQENKALKKKGTAESKQLNVYEIKVNKLELELESAKQKFGEIT 661
Cdd:COG4942 161 ELAALRAE--------------LEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELE 226
|
250
....*....|....*
gi 1622830651 662 DTYQKEIEDKKISEE 676
Cdd:COG4942 227 ALIARLEAEAAAAAE 241
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
562-799 |
2.73e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 45.06 E-value: 2.73e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 562 IENLEETETQLRNELEYVREELkqkrDEVKCKLDKSEENCNNLRKQVENKNKYiEELQQENKalKKKGTAESKQLNVYEI 641
Cdd:TIGR02169 165 VAEFDRKKEKALEELEEVEENI----ERLDLIIDEKRQQLERLRREREKAERY-QALLKEKR--EYEGYELLKEKEALER 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 642 KVNKLELELESAKQKFGEITDTYQkEIEDKKISEENLLEEVEK--AKVIADEAVKLQKEIDK------RCQHKIAEMVAL 713
Cdd:TIGR02169 238 QKEAIERQLASLEEELEKLTEEIS-ELEKRLEEIEQLLEELNKkiKDLGEEEQLRVKEKIGEleaeiaSLERSIAEKERE 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 714 MEKHKDQYDKIIEERD---SELGLYKSKEQEQSSLRASLETELSNLKTELLSVKKQLEIE--------------REEKEK 776
Cdd:TIGR02169 317 LEDAEERLAKLEAEIDkllAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVdkefaetrdelkdyREKLEK 396
|
250 260
....*....|....*....|...
gi 1622830651 777 LKREAKENTATLKEKKDKKTQTS 799
Cdd:TIGR02169 397 LKREINELKRELDRLQEELQRLS 419
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
392-742 |
2.81e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 44.73 E-value: 2.81e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 392 RTEQQRLEKSEDQLkiLTMELQKKSSELEEMTKLTNN---KEVELEELKKVLGEKEKLLYE-NKQFEKIAEELKGTEQEl 467
Cdd:pfam17380 287 RQQQEKFEKMEQER--LRQEKEEKAREVERRRKLEEAekaRQAEMDRQAAIYAEQERMAMErERELERIRQEERKRELE- 363
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 468 igllQAREKEVhdleiqltaitTSEQYYSKEVKDLKTELENEKLKNIELTSHCNKLSLENKELTQETSDMTLELKNQQED 547
Cdd:pfam17380 364 ----RIRQEEI-----------AMEISRMRELERLQMERQQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAE 428
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 548 INNNKKREERMLkqienleetETQLRNELEYVREELKQKRDEVKckldkseencnNLRKQVENKNKYIEELQQEnkalkk 627
Cdd:pfam17380 429 QEEARQREVRRL---------EEERAREMERVRLEEQERQQQVE-----------RLRQQEEERKRKKLELEKE------ 482
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 628 kgtaESKQLNVYEIKVNKLELELESAKQKFgeITDTYQKEIEDKKISEENLLEEVEKAKVIADEAVKLQKEIDKRcqHKI 707
Cdd:pfam17380 483 ----KRDRKRAEEQRRKILEKELEERKQAM--IEEERKRKLLEKEMEERQKAIYEEERRREAEEERRKQQEMEER--RRI 554
|
330 340 350
....*....|....*....|....*....|....*
gi 1622830651 708 AEMVALMEKHKDQYDKIIEERDSELGLYKSKEQEQ 742
Cdd:pfam17380 555 QEQMRKATEERSRLEAMEREREMMRQIVESEKARA 589
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
213-760 |
3.81e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.52 E-value: 3.81e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 213 DLNNNIEKMVTAFEELRvqaensrlEMHFKLKEDYEKIQHLE------QEYKKEVNDKEKQVSLLLI--------QISEK 278
Cdd:COG4913 222 DTFEAADALVEHFDDLE--------RAHEALEDAREQIELLEpirelaERYAAARERLAELEYLRAAlrlwfaqrRLELL 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 279 ENKMKDLTFLLEESRDKVNQLEEKTKLQSENLkQSIEKQH---------HLTKELEDIKVSLQRSVSTQKALEEDLQiat 349
Cdd:COG4913 294 EAELEELRAELARLEAELERLEARLDALREEL-DELEAQIrgnggdrleQLEREIERLERELEERERRRARLEALLA--- 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 350 kticQLTEEKEAQMEAFNKARAAhsfvVTEFETTICSLKELLRTEQQRLEKSEDQLKIltmELQKKSSELEEMTKLTNNK 429
Cdd:COG4913 370 ----ALGLPLPASAEEFAALRAE----AAALLEALEEELEALEEALAEAEAALRDLRR---ELRELEAEIASLERRKSNI 438
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 430 EVELEELKKVlgekekllyenkqfekIAEELKGTEQEL--IG-LLQAREKEvhdlEIQLTAITT-----------SEQYY 495
Cdd:COG4913 439 PARLLALRDA----------------LAEALGLDEAELpfVGeLIEVRPEE----ERWRGAIERvlggfaltllvPPEHY 498
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 496 SK-----EVKDLKTELENEKLKNI---ELTSHCNKLSLENK-----------------------------ELTQETSDMT 538
Cdd:COG4913 499 AAalrwvNRLHLRGRLVYERVRTGlpdPERPRLDPDSLAGKldfkphpfrawleaelgrrfdyvcvdspeELRRHPRAIT 578
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 539 LEL----------KNQQEDIN-------NNKKREERMLKQIENLEETETQLRNELEYVREELK--QKRDEVKCKLDKSEE 599
Cdd:COG4913 579 RAGqvkgngtrheKDDRRRIRsryvlgfDNRAKLAALEAELAELEEELAEAEERLEALEAELDalQERREALQRLAEYSW 658
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 600 NCNNL-------------RKQVENKNKYIEELQQENKALKKKGTAESKQLNVYEIKVNKLELELESAKQKFGEITDTYQk 666
Cdd:COG4913 659 DEIDVasaereiaeleaeLERLDASSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLE- 737
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 667 EIEDKKISE-----ENLLEEVEKAKVIADEAVKLQKEIDK---RCQHKIAEMVALMEKHKDQYDKIIEERDSEL------ 732
Cdd:COG4913 738 AAEDLARLElrallEERFAAALGDAVERELRENLEERIDAlraRLNRAEEELERAMRAFNREWPAETADLDADLeslpey 817
|
650 660 670
....*....|....*....|....*....|....*...
gi 1622830651 733 ----------GLYKSKEQEQSSLRASLETELSNLKTEL 760
Cdd:COG4913 818 lalldrleedGLPEYEERFKELLNENSIEFVADLLSKL 855
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
667-783 |
4.10e-04 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 44.08 E-value: 4.10e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 667 EIEDKKISEENLLEEVEKAKVIADEAVKLQKEiDKRCQhKIAEMVALMEKHKDQYDKIIEERDSELG-----LYKSKEQE 741
Cdd:COG2433 380 EALEELIEKELPEEEPEAEREKEHEERELTEE-EEEIR-RLEEQVERLEAEVEELEAELEEKDERIErlereLSEARSEE 457
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 1622830651 742 QSSLRAslETELSNLKTELLSVKKQLEIEREEKEKLKREAKE 783
Cdd:COG2433 458 RREIRK--DREISRLDREIERLERELEEERERIEELKRKLER 497
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
125-371 |
4.49e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.60 E-value: 4.49e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 125 AELKQKENKLQENRKIIEAQRKAIQELQFGNEKVSLKLEEGIQENKDLIKENNATRHLCNLLKETCARSAEKTKKYEYER 204
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 205 EETRQVYMDLNNNIEKMvtafeelrvqAENSRLEMHFKLKEDYEKIQHLeqEYKKEVNDKEKQvslLLIQISEKENKMKD 284
Cdd:COG4942 100 EAQKEELAELLRALYRL----------GRQPPLALLLSPEDFLDAVRRL--QYLKYLAPARRE---QAEELRADLAELAA 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 285 LTFLLEESRDKVNQLEEKTKLQSENLKQSIEKQHHLTKELEDIKVSLQRSVSTQKALEEDLQIATKTICQLTEEKEAQME 364
Cdd:COG4942 165 LRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTP 244
|
....*..
gi 1622830651 365 AFNKARA 371
Cdd:COG4942 245 AAGFAAL 251
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
432-797 |
5.13e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 44.19 E-value: 5.13e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 432 ELEELKKVLGEKEKLLYENKQFEKIAEELKGTEQELIGLLQAREKEVHDleiqltaittSEQYYSKEVKDLKTELENEKL 511
Cdd:pfam02463 157 EIEEEAAGSRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQ----------AKKALEYYQLKEKLELEEEYL 226
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 512 KNIELTSHCNKLSLENKELTQETSDMTLELKNQQEDINNNKKREERMLKQIENLEETETQLRNELEYVREELKQKRDEVK 591
Cdd:pfam02463 227 LYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLE 306
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 592 CKLDKSEENCNNLRKQVENKNKYIEELQQENKALKKKGTAESKQLNVYEIKVNKLELELESAKQKFGEITDTYQKEIEDK 671
Cdd:pfam02463 307 RRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERL 386
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 672 KISEENLLEEVEKAKVIADEAVKLQKEIDKRcqhkiaemvalmEKHKDQYDKIIEERDSELGLYKSKEQEQSSLRASLET 751
Cdd:pfam02463 387 SSAAKLKEEELELKSEEEKEAQLLLELARQL------------EDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELE 454
|
330 340 350 360
....*....|....*....|....*....|....*....|....*.
gi 1622830651 752 ELSNLKTELLSVKKQLEIEREEKEKLKREAKENTATLKEKKDKKTQ 797
Cdd:pfam02463 455 KQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQ 500
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
526-813 |
5.36e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 44.19 E-value: 5.36e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 526 ENKELTQETSDMTLELKNQQEDINNNKKREERMLKQIENLEETETQLRNELEYVREELKQKRDEVKCKLDKSEENCNNLR 605
Cdd:pfam02463 174 ALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEI 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 606 KQVENKNKYIEELQQENKALKKKGTAESKQLNVYEIKVNKLELELESAKQKFGEITDTYQKEIEDKKISEENLLEEVEKA 685
Cdd:pfam02463 254 ESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKE 333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 686 KVIADEAVKLQKEIDKRCQHKIAEMVALMEKHKDQydkiiEERDSELGLYKSKEQEQSSLRASLETELSNLKTELLSvKK 765
Cdd:pfam02463 334 KEEIEELEKELKELEIKREAEEEEEEELEKLQEKL-----EQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEK-EA 407
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 1622830651 766 QLEIEREEKEKLKREAKENTATLKEKKDKKTQTSLLETPEMYWKFDSK 813
Cdd:pfam02463 408 QLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEK 455
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
450-732 |
7.27e-04 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 42.97 E-value: 7.27e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 450 NKQFEKIAEELKGTEQELIGL---LQAREKEVHDLEIQLTAITTSEQYYSKEVKDLKTELENEKLKNIELTSHCNKLSLE 526
Cdd:COG4372 44 QEELEQLREELEQAREELEQLeeeLEQARSELEQLEEELEELNEQLQAAQAELAQAQEELESLQEEAEELQEELEELQKE 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 527 NKELTQETSDMTLELKNQQEDINNNKKREERMLKQIENLEETETQLRNELEY-----VREELKQKRDEVKCKLDKSEENC 601
Cdd:COG4372 124 RQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQELQAlseaeAEQALDELLKEANRNAEKEEELA 203
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 602 NNLRKQV-ENKNKYIEELQQENKALKKKGTAESKQLNVYEIKVNKLELELESAKQKFGEITDTYQKEIEDKKISEENLLE 680
Cdd:COG4372 204 EAEKLIEsLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEELLEEVILKEIEELELAILVEKDTEEEELEIAAL 283
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 1622830651 681 EVEKAKVIADEAVKLQKEIDKRCQHKIAEMVALMEKHKDQYDKIIEERDSEL 732
Cdd:COG4372 284 ELEALEEAALELKLLALLLNLAALSLIGALEDALLAALLELAKKLELALAIL 335
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
95-524 |
7.83e-04 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 43.35 E-value: 7.83e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 95 DLEN-SEALSRVYSKLYKEAEKIKKWkvsieAELKQKENKLQENRKIIEAQRKAIQELQFGNEKVSLKLEEGIQENKDLI 173
Cdd:PRK01156 306 DIENkKQILSNIDAEINKYHAIIKKL-----SVLQKDYNDYIKKKSRYDDLNNQILELEGYEMDYNSYLKSIESLKKKIE 380
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 174 KENNATRHLCNLLKETCARSAEKTKKYEYEREETRQVYMDLNNNIEKMVTAFEELRVQAENSRLEMHFKLKEDY------ 247
Cdd:PRK01156 381 EYSKNIERMSAFISEILKIQEIDPDAIKKELNEINVKLQDISSKVSSLNQRIRALRENLDELSRNMEMLNGQSVcpvcgt 460
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 248 ----EKIQHLEQEYKKEVNDKEKQVSLLLIQISEKENKMKDLTFLLEesrdkvnQLEEKTKLQSENLKQSIEKQHHltkE 323
Cdd:PRK01156 461 tlgeEKSNHIINHYNEKKSRLEEKIREIEIEVKDIDEKIVDLKKRKE-------YLESEEINKSINEYNKIESARA---D 530
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 324 LEDIKVSLQRSVSTQ-KALEEDLQIATKTIcqltEEKEAQMEAFNKARAAHSFVVTEfetticslkellrTEQQRLEKSE 402
Cdd:PRK01156 531 LEDIKIKINELKDKHdKYEEIKNRYKSLKL----EDLDSKRTSWLNALAVISLIDIE-------------TNRSRSNEIK 593
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 403 DQLKILTMELQKKSSELEEMTKLTNNKEVELEELKKVLGEKEKLLYENK-QFEKIAEELKGTEQELIGlLQAREKEVHDL 481
Cdd:PRK01156 594 KQLNDLESRLQEIEIGFPDDKSYIDKSIREIENEANNLNNKYNEIQENKiLIEKLRGKIDNYKKQIAE-IDSIIPDLKEI 672
|
410 420 430 440
....*....|....*....|....*....|....*....|...
gi 1622830651 482 EIQLTAITTSEQYYSKEVKDLKTELENEKLKNIELTSHCNKLS 524
Cdd:PRK01156 673 TSRINDIEDNLKKSRKALDDAKANRARLESTIEILRTRINELS 715
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
108-777 |
8.10e-04 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 43.53 E-value: 8.10e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 108 KLYKEAEKIKKWKVSIEA----ELKQKENKLQENRKIIEAQRKAIQELQFGN-EKVSLKLEEGI-QENKDLIKENNATRH 181
Cdd:COG5022 763 RYLQALKRIKKIQVIQHGfrlrRLVDYELKWRLFIKLQPLLSLLGSRKEYRSyLACIIKLQKTIkREKKLRETEEVEFSL 842
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 182 LCNLLKETCARSAEKTKKYE------------YEREETRQVYMDLNNNIEKmVTAFEELRVQAENSRLEMHFKLKED-YE 248
Cdd:COG5022 843 KAEVLIQKFGRSLKAKKRFSllkketiylqsaQRVELAERQLQELKIDVKS-ISSLKLVNLELESEIIELKKSLSSDlIE 921
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 249 KIQHLEQEYK--KEVNDKEKQVSLLLIQISEKENKMKDLTF---LLEESRDKVNQLEEKTKLQSENLKQSIEKQHH--LT 321
Cdd:COG5022 922 NLEFKTELIArlKKLLNNIDLEEGPSIEYVKLPELNKLHEVeskLKETSEEYEDLLKKSTILVREGNKANSELKNFkkEL 1001
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 322 KELEDIKVSLQRSVSTQKALEED---LQIATKTICQLTEEKE----------AQMEAFNKARAAHSFVVTEFETTICSLK 388
Cdd:COG5022 1002 AELSKQYGALQESTKQLKELPVEvaeLQSASKIISSESTELSilkplqklkgLLLLENNQLQARYKALKLRRENSLLDDK 1081
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 389 ELLRTEQQR----------LEKSEDQLKILTMEL------QKKSSELEEMTKLTNNKEVELEELKKVLGEKEKLLYENKQ 452
Cdd:COG5022 1082 QLYQLESTEnllktinvkdLEVTNRNLVKPANVLqfivaqMIKLNLLQEISKFLSQLVNTLEPVFQKLSVLQLELDGLFW 1161
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 453 FEKIAEELKGteQELIGLLQAREKEVHDLEIQLTAittseqyYSKEVKDLKTELENEKLKNIELTShcnkLSLENKELTQ 532
Cdd:COG5022 1162 EANLEALPSP--PPFAALSEKRLYQSALYDEKSKL-------SSSEVNDLKNELIALFSKIFSGWP----RGDKLKKLIS 1228
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 533 ETSDMTLELKNQQEDINNNKKREERMLKQIENLEETETQLRNELEyvreelkqkrdevkckldkseencnnlrKQVENKN 612
Cdd:COG5022 1229 EGWVPTEYSTSLKGFNNLNKKFDTPASMSNEKLLSLLNSIDNLLS----------------------------SYKLEEE 1280
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 613 KYIEELQQENKALKkkgtaeSKQLNVYEIKVNKLELELESAKQKFGEITDTY--QKEIEDKKISEENLLEEVEKAKVIAD 690
Cdd:COG5022 1281 VLPATINSLLQYIN------VGLFNALRTKASSLRWKSATEVNYNSEELDDWcrEFEISDVDEELEELIQAVKVLQLLKD 1354
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 691 EAVKLQKEIDKRCQHKIAEMVALMEKHK--DQYDKIIEERDSELGLYKSKEQEQSSLRASLETELS-----NLKTELLSV 763
Cdd:COG5022 1355 DLNKLDELLDACYSLNPAEIQNLKSRYDpaDKENNLPKEILKKIEALLIKQELQLSLEGKDETEVHlseifSEEKSLISL 1434
|
730
....*....|....
gi 1622830651 764 KKQLEIEREEKEKL 777
Cdd:COG5022 1435 DRNSIYKEEVLSSL 1448
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
559-729 |
1.15e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 41.83 E-value: 1.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 559 LKQIENLEETETQLRnELEYVREELKQKRDEVKCKLDKSEENCNNLRKQVENKNKYIEELQQENKALKKKGTAESKQLNv 638
Cdd:COG1579 6 LRALLDLQELDSELD-RLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLG- 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 639 yEIKVNK----LELELESAKqkfgeitdtyqKEIEDKKISEENLLEEVEKAKVIADEAVKLQKEIDKRCQHKIAEMVALM 714
Cdd:COG1579 84 -NVRNNKeyeaLQKEIESLK-----------RRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEEL 151
|
170
....*....|....*
gi 1622830651 715 EKHKDQYDKIIEERD 729
Cdd:COG1579 152 AELEAELEELEAERE 166
|
|
| PRK00106 |
PRK00106 |
ribonuclease Y; |
522-708 |
1.35e-03 |
|
ribonuclease Y;
Pssm-ID: 178867 [Multi-domain] Cd Length: 535 Bit Score: 42.55 E-value: 1.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 522 KLSLENKELT-----QETSDMTLELKNQQEDINNNKKREERMLKQiENLEETETQLRNELEYVREELKQKRDEVKCKLDK 596
Cdd:PRK00106 27 KSAKEAAELTllnaeQEAVNLRGKAERDAEHIKKTAKRESKALKK-ELLLEAKEEARKYREEIEQEFKSERQELKQIESR 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 597 SEENCNNLRKQVENKNKYIEELQQENKALKKKgtaeSKQLNVYEIKVNKLELELESAKQKFGEITDTYQKEIEDKKiSEE 676
Cdd:PRK00106 106 LTERATSLDRKDENLSSKEKTLESKEQSLTDK----SKHIDEREEQVEKLEEQKKAELERVAALSQAEAREIILAE-TEN 180
|
170 180 190
....*....|....*....|....*....|....*..
gi 1622830651 677 NLLEEV-----EKAKVIADEAVKLQKEIDKRCQHKIA 708
Cdd:PRK00106 181 KLTHEIatrirEAEREVKDRSDKMAKDLLAQAMQRLA 217
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
274-477 |
1.49e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 42.12 E-value: 1.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 274 QISEKENKMKDLTFLLEESRDKVNQLEEKtklqsenlkqsIEKqhhLTKELEDIKVSLQRSVSTQKALEEDLQIATKTIC 353
Cdd:COG3883 17 QIQAKQKELSELQAELEAAQAELDALQAE-----------LEE---LNEEYNELQAELEALQAEIDKLQAEIAEAEAEIE 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 354 QLTEEKEAQMEAFNKARAAHSFV--------VTEFETTICSLKELLRTEQQRLEKSEDQLKILTMELQKKSSELEEMTKL 425
Cdd:COG3883 83 ERREELGERARALYRSGGSVSYLdvllgsesFSDFLDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEAL 162
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1622830651 426 TNNKEVELEELKKVLGEKEKLLYENKQFEKIAEELKGTEQELIGLLQAREKE 477
Cdd:COG3883 163 KAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAA 214
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
100-589 |
1.72e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.06 E-value: 1.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 100 EALSRVYSKLYKEAEKIKKwkvSIEAELKQKENKLQENRKIIEAQRKAIQELQfgnekvslKLEEGIQENKDLIKEnnat 179
Cdd:COG4717 49 ERLEKEADELFKPQGRKPE---LNLKELKELEEELKEAEEKEEEYAELQEELE--------ELEEELEELEAELEE---- 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 180 rhlcnllketcARSAEKTKKYEYEREETRQVYMDLNNNIEKMVTAFEELRVQAENsrlemhfkLKEDYEKIQHLEQEYKK 259
Cdd:COG4717 114 -----------LREELEKLEKLLQLLPLYQELEALEAELAELPERLEELEERLEE--------LRELEEELEELEAELAE 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 260 EVNDKEKQVSLLLIQISEKenkmkdltflLEESRDKVNQLEEKTKLQSENLKQSIEKQHHLTKELEDIKVSLQRSVSTQK 339
Cdd:COG4717 175 LQEELEELLEQLSLATEEE----------LQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEER 244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 340 ALEED-LQIATKTICQLTeekeaqmeAFNKARAAHSFVVTEFETTICSLKELLRTEQQRLEKSedqlkiltmeLQKKSSE 418
Cdd:COG4717 245 LKEARlLLLIAAALLALL--------GLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKAS----------LGKEAEE 306
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 419 LEEMTKLTNNKEVELEELKKVLGEKEKLLYEN-KQFEKIAEELKGTEQELIGLLQAREKEVHDLEIQ----LTAITTSEQ 493
Cdd:COG4717 307 LQALPALEELEEEELEELLAALGLPPDLSPEElLELLDRIEELQELLREAEELEEELQLEELEQEIAallaEAGVEDEEE 386
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 494 YYSK-----EVKDLKTELE--NEKLKNIELTSHCNKLSLENKELTQETSDMTLELKNQQEDINNNKKREERMLKQIENLE 566
Cdd:COG4717 387 LRAAleqaeEYQELKEELEelEEQLEELLGELEELLEALDEEELEEELEELEEELEELEEELEELREELAELEAELEQLE 466
|
490 500
....*....|....*....|....*
gi 1622830651 567 ETET--QLRNELEYVREELKQKRDE 589
Cdd:COG4717 467 EDGElaELLQELEELKAELRELAEE 491
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
94-697 |
1.80e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 42.20 E-value: 1.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 94 SDLENSEALSRVYSKLyKEAEKIKKWKVS----IEAELKQKENKLQENRKIIEAQRKAIQELQfgNEKVSLKLEEGIQEN 169
Cdd:PRK01156 156 DEILEINSLERNYDKL-KDVIDMLRAEISnidyLEEKLKSSNLELENIKKQIADDEKSHSITL--KEIERLSIEYNNAMD 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 170 KdlikennaTRHLCNLLKETCARSAEKTKKYEYEREETRQVYMDLNNNIEkmVTAFEELRVQAENSRLEMHFKLKEDYEK 249
Cdd:PRK01156 233 D--------YNNLKSALNELSSLEDMKNRYESEIKTAESDLSMELEKNNY--YKELEERHMKIINDPVYKNRNYINDYFK 302
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 250 iqhleqeYKKEVNDKEKQVSLLLIQISEKENKMKDLTFLLEESRDKVNQLEEKTKLQSE--NLKQSIEKQHHLTKELEDI 327
Cdd:PRK01156 303 -------YKNDIENKKQILSNIDAEINKYHAIIKKLSVLQKDYNDYIKKKSRYDDLNNQilELEGYEMDYNSYLKSIESL 375
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 328 KVSLQRSVSTQKALEEDlqiatktICQLTEEKEAQMEAFNKARAAHSFVVTEFETTICSLKELLRTEQQRLEKSEDQLKI 407
Cdd:PRK01156 376 KKKIEEYSKNIERMSAF-------ISEILKIQEIDPDAIKKELNEINVKLQDISSKVSSLNQRIRALRENLDELSRNMEM 448
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 408 LTME-------LQKKSSELEEMTKLTNNKEVELEE-LKKVLGEKEKLLYENKQFEKIAEELKGTEqelIGLLQAREKEVH 479
Cdd:PRK01156 449 LNGQsvcpvcgTTLGEEKSNHIINHYNEKKSRLEEkIREIEIEVKDIDEKIVDLKKRKEYLESEE---INKSINEYNKIE 525
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 480 DLEIQLTAITTSEqyyskevkdlkTELENEKLKNIELTSHCNKLSLENKElTQETSDMTLELKNQQEDINNNKKREERML 559
Cdd:PRK01156 526 SARADLEDIKIKI-----------NELKDKHDKYEEIKNRYKSLKLEDLD-SKRTSWLNALAVISLIDIETNRSRSNEIK 593
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 560 KQIENLEETetqlRNELEYVREELKQKRDEVKCKLDKSEENCNNLRKQVENKNKYIEELQQENKALKKK-GTAESKQLNV 638
Cdd:PRK01156 594 KQLNDLESR----LQEIEIGFPDDKSYIDKSIREIENEANNLNNKYNEIQENKILIEKLRGKIDNYKKQiAEIDSIIPDL 669
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*....
gi 1622830651 639 YEIKVNKLELElESAKQKFGEITDTYQKEIEDKKISEENLLEEVEKAKVIADEAVKLQK 697
Cdd:PRK01156 670 KEITSRINDIE-DNLKKSRKALDDAKANRARLESTIEILRTRINELSDRINDINETLES 727
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
410-813 |
1.80e-03 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 42.20 E-value: 1.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 410 MELQKKSSELEE------MTKLTNNKEVELEELKKVlGEKEKLLyeNKQFEKIAEELKGTEQELIGLLQAREKEVHDLEi 483
Cdd:PLN02939 84 MELPQKSTSSDDdhnrasMQRDEAIAAIDNEQQTNS-KDGEQLS--DFQLEDLVGMIQNAEKNILLLNQARLQALEDLE- 159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 484 qltAITTSEQYYSKEVKDLKTELENeklknielTSHCNKLSLENKELTQETSDMTLELKNQ-QEDINNNKKREERMLKQI 562
Cdd:PLN02939 160 ---KILTEKEALQGKINILEMRLSE--------TDARIKLAAQEKIHVEILEEQLEKLRNElLIRGATEGLCVHSLSKEL 228
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 563 ENLEETETQLRNELEYVREELkqkrDEVKckldKSEENCNNLRKQVENKNKYIEELQQENKALKKK-GTAESKQLNVYEI 641
Cdd:PLN02939 229 DVLKEENMLLKDDIQFLKAEL----IEVA----ETEERVFKLEKERSLLDASLRELESKFIVAQEDvSKLSPLQYDCWWE 300
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 642 KVNKLELELESAKQKFGEITDTYQK--EIEDKKiseENLLEEVEKAKViadeaVKLQKEIDKRCQHKIaemvALMEKHKD 719
Cdd:PLN02939 301 KVENLQDLLDRATNQVEKAALVLDQnqDLRDKV---DKLEASLKEANV-----SKFSSYKVELLQQKL----KLLEERLQ 368
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 720 QYDkiiEERDSELGLYKSKEQEqsslrasLETELSNLKTEllSVKKQLE--IEREEKEKLKREAKENTATLKEKKDKKTQ 797
Cdd:PLN02939 369 ASD---HEIHSYIQLYQESIKE-------FQDTLSKLKEE--SKKRSLEhpADDMPSEFWSRILLLIDGWLLEKKISNND 436
|
410
....*....|....*.
gi 1622830651 798 TSLLEtpEMYWKFDSK 813
Cdd:PLN02939 437 AKLLR--EMVWKRDGR 450
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
226-370 |
3.53e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 40.92 E-value: 3.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 226 EELRVQAENSRLEmhfKLKEDYEKIQHLEQEYKKEVNDKEKQVSLLLIQISEKENKMKDLTFLLEESRDKVNQLEEKTKL 305
Cdd:PRK12704 45 EEAKKEAEAIKKE---ALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQ 121
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1622830651 306 QSENLKQSIEKQHHLTKELEDIkvsLQR--SVSTQKA-------LEEDLQI-ATKTICQLteEKEAQMEAFNKAR 370
Cdd:PRK12704 122 KQQELEKKEEELEELIEEQLQE---LERisGLTAEEAkeillekVEEEARHeAAVLIKEI--EEEAKEEADKKAK 191
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
89-566 |
3.55e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 41.46 E-value: 3.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 89 EGLKDSDLENSEALSRVYSKLYKEAEKIKKWKVSIEAELKQKENKLQENRKIIEAQRKAIQELqfgnEKVSLKLEEGIQE 168
Cdd:COG1196 301 EQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEA----EEALLEAEAELAE 376
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 169 NKDLIKENNATRhlcnllkETCARSAEKTKKYEYEREETRQVYMDLNNNIEKMVTAFEELRVQAENSRLEmhfkLKEDYE 248
Cdd:COG1196 377 AEEELEELAEEL-------LEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEE----EEEALE 445
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 249 KIQHLEQEYKKEVNDKEKQVSLLLIQISEKENKMKDLTFLLEESRDKVNQLEEKTKLQSENLKQSIEKQHHLTKELEDIK 328
Cdd:COG1196 446 EAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGA 525
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 329 VSLQRSV--------------STQKALEEDLQIATKTICQLTEEKEA--------QMEAFNKARAAHSFVVTEFEttICS 386
Cdd:COG1196 526 VAVLIGVeaayeaaleaalaaALQNIVVEDDEVAAAAIEYLKAAKAGratflpldKIRARAALAAALARGAIGAA--VDL 603
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 387 LKELLRTEQQRLEKSEDQLKILTMELQKKSSELEEMTKLTNNKEVELEELKKVLGEKEKLLyenKQFEKIAEELKGTEQE 466
Cdd:COG1196 604 VASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTG---GSRRELLAALLEAEAE 680
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 467 LIGLLQAREKEVHDLEIQLTAITTSEQYYSKEVKDLKTELENEKLKNIELTSHCNKLSLENKELTQETSDMTLELKNQQE 546
Cdd:COG1196 681 LEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPP 760
|
490 500
....*....|....*....|
gi 1622830651 547 DINNNKKREERMLKQIENLE 566
Cdd:COG1196 761 DLEELERELERLEREIEALG 780
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
195-694 |
5.33e-03 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 40.81 E-value: 5.33e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 195 EKTKKYEYEREETRQVYMDLNNNIEKMVTAFEELRVQAENSRLEMHFKLKeDYEKIQHlEQEYKKEVNDKEKQVSLLLIQ 274
Cdd:TIGR01612 1104 EENIKYADEINKIKDDIKNLDQKIDHHIKALEEIKKKSENYIDEIKAQIN-DLEDVAD-KAISNDDPEEIEKKIENIVTK 1181
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 275 ISEKENKMKDLTFLLEE----SRDKVNQLEEKT----------KLQSENLKQSIEKQHHLTKELEDIKVSLQRSVSTQKA 340
Cdd:TIGR01612 1182 IDKKKNIYDEIKKLLNEiaeiEKDKTSLEEVKGinlsygknlgKLFLEKIDEEKKKSEHMIKAMEAYIEDLDEIKEKSPE 1261
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 341 LEEDLQIATkticqlteEKEAQMEAFNKARAA---HSFVVTEFETTICSLKEL-LRTEQQRLEKSE-----DQLKILTME 411
Cdd:TIGR01612 1262 IENEMGIEM--------DIKAEMETFNISHDDdkdHHIISKKHDENISDIREKsLKIIEDFSEESDindikKELQKNLLD 1333
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 412 LQKKSSELEE-MTKLTNNKEV-ELEELKKVLGEKEKLLYENKQFEK-IAEELKGTE------QELIGLLQAREK-----E 477
Cdd:TIGR01612 1334 AQKHNSDINLyLNEIANIYNIlKLNKIKKIIDEVKEYTKEIEENNKnIKDELDKSEklikkiKDDINLEECKSKiestlD 1413
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 478 VHDLEIQLTAITTSEQYYSKEVKDLKTELENEK---------LKNIELTSHCNKLSLENKElTQETSDMTL---ELKNQQ 545
Cdd:TIGR01612 1414 DKDIDECIKKIKELKNHILSEESNIDTYFKNADennenvlllFKNIEMADNKSQHILKIKK-DNATNDHDFninELKEHI 1492
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 546 EDINNNKKREERMLKQIEN-----------------------LEETETQLRNELEYVREELKQKRDEVKCKLDKSEENCN 602
Cdd:TIGR01612 1493 DKSKGCKDEADKNAKAIEKnkelfeqykkdvtellnkysalaIKNKFAKTKKDSEIIIKEIKDAHKKFILEAEKSEQKIK 1572
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 603 NLRKQV----------ENKNKYIEELQQ-----ENKALK------------KKGTAESKQLNVYEIKVNKLELELESAK- 654
Cdd:TIGR01612 1573 EIKKEKfrieddaaknDKSNKAAIDIQLslenfENKFLKisdikkkindclKETESIEKKISSFSIDSQDTELKENGDNl 1652
|
570 580 590 600
....*....|....*....|....*....|....*....|...
gi 1622830651 655 ---QKFGEITDTYQKEIEDKKISEENLLEEVEKAKVIADEAVK 694
Cdd:TIGR01612 1653 nslQEFLESLKDQKKNIEDKKKELDELDSEIEKIEIDVDQHKK 1695
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
226-590 |
5.77e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 40.71 E-value: 5.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 226 EELRVQAEnSRLEMHFKLKEDYEKIQHLEQEYKKEVNdkekqVSLLLIQISEKENKMKDLTFLLEESRDKVNQLEEKTKL 305
Cdd:PRK04863 789 EQLRAERE-ELAERYATLSFDVQKLQRLHQAFSRFIG-----SHLAVAFEADPEAELRQLNRRRVELERALADHESQEQQ 862
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 306 QSENLKQSIEKQHHLTKELEDIKVslqrsvstqkaLEEDlqiatkTICQLTEEKEAQMEAFNKARAahsfVVTEFETTIC 385
Cdd:PRK04863 863 QRSQLEQAKEGLSALNRLLPRLNL-----------LADE------TLADRVEEIREQLDEAEEAKR----FVQQHGNALA 921
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 386 SLKEL---LRTEQQRLEksedqlkiltmELQKKSSELEEMTKLTNNKEVELEELKKVlgeKEKLLYENkqfekiAEELKG 462
Cdd:PRK04863 922 QLEPIvsvLQSDPEQFE-----------QLKQDYQQAQQTQRDAKQQAFALTEVVQR---RAHFSYED------AAEMLA 981
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 463 TEQELIGLLQAREKEV-HDLEIQLTAITTSEQYYSKEVKDLkteleneklknIELTSHCNKLSLENKELTQETSDMTL-- 539
Cdd:PRK04863 982 KNSDLNEKLRQRLEQAeQERTRAREQLRQAQAQLAQYNQVL-----------ASLKSSYDAKRQMLQELKQELQDLGVpa 1050
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1622830651 540 ------ELKNQQEDINN----NKKREERMLKQIENLEETETQLRNELEYVREELKQKRDEV 590
Cdd:PRK04863 1051 dsgaeeRARARRDELHArlsaNRSRRNQLEKQLTFCEAEMDNLTKKLRKLERDYHEMREQV 1111
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
541-793 |
6.26e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 40.43 E-value: 6.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 541 LKNQQEDINNNKKREERMLKQIENLEETETQLRNELEYVREELKQKRDEVKcKLDKSEENCNNLRKQVENKNKYIEELQQ 620
Cdd:PRK03918 167 LGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELP-ELREELEKLEKEVKELEELKEEIEELEK 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 621 ENKALKKKGTAESKQLNVYEIKVNKLELELESAKQKFGEITDTYQKEIEDKKISE-----ENLLEEVEKAKVIADEAVKL 695
Cdd:PRK03918 246 ELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEfyeeyLDELREIEKRLSRLEEEING 325
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 696 QKEIDKRCQHKIAEMVALMEKHKDQYDKI--IEERDSELGLYKSKEQEQSSLRASLE-TELSNLKTELLSVKKQLEIERE 772
Cdd:PRK03918 326 IEERIKELEEKEERLEELKKKLKELEKRLeeLEERHELYEEAKAKKEELERLKKRLTgLTPEKLEKELEELEKAKEEIEE 405
|
250 260
....*....|....*....|.
gi 1622830651 773 EKEKLKREAKENTATLKEKKD 793
Cdd:PRK03918 406 EISKITARIGELKKEIKELKK 426
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
187-467 |
8.18e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 40.11 E-value: 8.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 187 KETCARSAEKTKKYEyEREETRQVYMDlnnniekmvtafEELRVQAENSRLEMhfklkEDYEKIQHLEQEYKKEVNDKEK 266
Cdd:pfam17380 305 KEEKAREVERRRKLE-EAEKARQAEMD------------RQAAIYAEQERMAM-----ERERELERIRQEERKRELERIR 366
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 267 QVsllliQISEKENKMKDLTFLLEESRDKVNQLEE------KTKLQSENLKQSIEKQhhlTKELEDIKVSLQRSVSTQ-K 339
Cdd:pfam17380 367 QE-----EIAMEISRMRELERLQMERQQKNERVRQeleaarKVKILEEERQRKIQQQ---KVEMEQIRAEQEEARQREvR 438
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 340 ALEEDLQIATKTICQLTEEKEAQMEAFNKARAAHSFVVTEFEtticslkellRTEQQRLEKSEDQLKILTMELQKKSSEL 419
Cdd:pfam17380 439 RLEEERAREMERVRLEEQERQQQVERLRQQEEERKRKKLELE----------KEKRDRKRAEEQRRKILEKELEERKQAM 508
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 1622830651 420 EEMTKLTNNKEVELEELKKVLGEKEKllyenkqfEKIAEELKGTEQEL 467
Cdd:pfam17380 509 IEEERKRKLLEKEMEERQKAIYEEER--------RREAEEERRKQQEM 548
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
671-791 |
8.40e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 39.76 E-value: 8.40e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 671 KKISEENLLEEVEKAKVIADEAvklQKEIDKRCQHKIAEMVALMEKHKDQYDKIIEERDSELG-LYKSKEQEQSSLRASL 749
Cdd:PRK12704 26 KKIAEAKIKEAEEEAKRILEEA---KKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQkLEKRLLQKEENLDRKL 102
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 1622830651 750 EtELSNLKTELLSVKKQLEIEREEKEKLKREAKENTATLKEK 791
Cdd:PRK12704 103 E-LLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQE 143
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
528-716 |
8.95e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 39.36 E-value: 8.95e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 528 KELTQETSDMTLELKNQQEDINNNKKREERMLKQIENLEETETQLRNELEYVREELKQKRDEVKCKLDKSEENCNNLR-- 605
Cdd:COG4942 44 AALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAELLRALYRLGRQPPla 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 606 --------KQVENKNKYIEELQQENKALKKKGTAESKQLNVYEIKVNKLELELESAKQKfgeiTDTYQKEIEDKKISEEN 677
Cdd:COG4942 124 lllspedfLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAE----LEEERAALEALKAERQK 199
|
170 180 190
....*....|....*....|....*....|....*....
gi 1622830651 678 LLEEVEKAKVIADEAVKLQKEIDKRCQHKIAEMVALMEK 716
Cdd:COG4942 200 LLARLEKELAELAAELAELQQEAEELEALIARLEAEAAA 238
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
191-372 |
9.61e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 39.43 E-value: 9.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 191 ARSAEKTKKYEYEREETRQVYMDLNNNIEKMVTAFEELRVQAENSRLEMHfKLKEDYEKIQhleqeykKEVNDKEKQVSL 270
Cdd:COG3883 19 QAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEID-KLQAEIAEAE-------AEIEERREELGE 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622830651 271 LLIQISEKENKMKDLTFLLEES--RDKVNQLEEKTKLQSENlKQSIEKQHHLTKELEDIKVSLQRSVSTQKALEEDLQIA 348
Cdd:COG3883 91 RARALYRSGGSVSYLDVLLGSEsfSDFLDRLSALSKIADAD-ADLLEELKADKAELEAKKAELEAKLAELEALKAELEAA 169
|
170 180
....*....|....*....|....
gi 1622830651 349 TKTICQLTEEKEAQMEAFNKARAA 372
Cdd:COG3883 170 KAELEAQQAEQEALLAQLSAEEAA 193
|
|
| |
