CPSF4 cleavage and polyadenylation specific factor 4 [Macaca mulatta (Rhesus monkey)] - Gene

Summary

Official Symbol: CPSF4provided by VGNC
Official Full Name: cleavage and polyadenylation specific factor 4provided by VGNC
Primary source: VGNC:VGNC:71474
Locus tag: EGK_13489
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Macaca mulatta
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 3

Exon count:: 9

Annotation release	Status	Assembly	Chr	Location
103	current	Mmul_10 (GCF_003339765.1)	3	NC_041756.1 (41550205..41568893)
102	previous assembly	Mmul_8.0.1 (GCF_000772875.2)	3	NC_027895.1 (124876976..124895604)

Chromosome 3 - NC_041756.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables RNA binding	IEA Inferred from Electronic Annotation more info	PubMed
enables zinc ion binding	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
part_of mRNA cleavage and polyadenylation specificity factor complex	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: cleavage and polyadenylation specificity factor subunit 4

Names: cleavage and polyadenylation specific factor 4, 30kDa

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001257618.1 → NP_001244547.1 cleavage and polyadenylation specificity factor subunit 4

See identical proteins and their annotated locations for NP_001244547.1

Status: PROVISIONAL

Source sequence(s)

JU332627

UniProtKB/TrEMBL

H9FP23

Conserved Domains (2) summary

COG5084
Location:25 → 176

YTH1; Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]

COG5222
Location:201 → 233

COG5222; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

NC_041756.1 Reference Mmul_10 Primary Assembly

Range

41550205..41568893

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_015134315.1 → XP_014989801.1 cleavage and polyadenylation specificity factor subunit 4 isoform X1

UniProtKB/TrEMBL

A0A8J8YI44, F7BI49, G7MNR2

Conserved Domains (2) summary

COG5084
Location:25 → 211

YTH1; Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]

COG5222
Location:226 → 258

COG5222; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
XM_015134318.1 → XP_014989804.1 cleavage and polyadenylation specificity factor subunit 4 isoform X4

Conserved Domains (2) summary

COG5084
Location:25 → 176

YTH1; Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]

COG5222
Location:200 → 232

COG5222; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
XM_015134316.1 → XP_014989802.1 cleavage and polyadenylation specificity factor subunit 4 isoform X2

Conserved Domains (1) summary

COG5084
Location:25 → 132

YTH1; Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
XM_015134317.1 → XP_014989803.1 cleavage and polyadenylation specificity factor subunit 4 isoform X3

Conserved Domains (2) summary

smart00356
Location:63 → 88

ZnF_C3H1; zinc finger

COG5084
Location:25 → 132

YTH1; Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
XM_028844958.1 → XP_028700791.1 cleavage and polyadenylation specificity factor subunit 4 isoform X6

Conserved Domains (2) summary

COG5084
Location:2 → 123

YTH1; Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]

COG5222
Location:148 → 180

COG5222; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
XM_028844957.1 → XP_028700790.1 cleavage and polyadenylation specificity factor subunit 4 isoform X5

Conserved Domains (2) summary

COG5084
Location:2 → 158

YTH1; Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]

COG5222
Location:173 → 205

COG5222; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]