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VRTN vertebrae development associated [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 699513, updated on 17-Aug-2024

Summary

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Official Symbol
VRTNprovided by VGNC
Official Full Name
vertebrae development associatedprovided by VGNC
Primary source
VGNC:VGNC:79236
Locus tag
EGK_18374
See related
Ensembl:ENSMMUG00000012383
Gene type
protein coding
RefSeq status
INFERRED
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Also known as
C14orf115; C7H14orf115
Orthologs
human mouse all
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Genomic context

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See VRTN in Genome Data Viewer
Location:
chromosome: 7
Exon count:
3
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 7 NC_041760.1 (136454434..136477657)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 7 NC_027899.1 (136712423..136734575)

Chromosome 7 - NC_041760.1Genomic Context describing neighboring genes Neighboring gene visual system homeobox 2 Neighboring gene ATP binding cassette subfamily D member 4 Neighboring gene 40S ribosomal protein S2 pseudogene Neighboring gene synapse differentiation inducing 1 like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of chromatin IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
vertnin
Names
vertebrae development homolog (pig)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001194898.1 → NP_001181827.1  vertnin

    See identical proteins and their annotated locations for NP_001181827.1

    Status: INFERRED

    Source sequence(s)
    QNVO02000421
    UniProtKB/TrEMBL
    A0A8J8XKL1, F7APM8, G7MYS9
    Related
    ENSMMUP00000032728.1, ENSMMUT00000017365.4
    Conserved Domains (1) summary
    NF033516
    Location:273 → 352
    transpos_IS3; IS3 family transposase

RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041760.1 Reference Mmul_10 Primary Assembly

    Range
    136454434..136477657
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028850259.1 → XP_028706092.1  vertnin isoform X1

    UniProtKB/TrEMBL
    A0A8J8XKL1, F7APM8, G7MYS9
    Conserved Domains (1) summary
    NF033516
    Location:273 → 352
    transpos_IS3; IS3 family transposase
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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