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TSPAN17 tetraspanin 17 [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 697739, updated on 17-Aug-2024

Summary

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Official Symbol
TSPAN17provided by VGNC
Official Full Name
tetraspanin 17provided by VGNC
Primary source
VGNC:VGNC:78932
See related
Ensembl:ENSMMUG00000000144
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See TSPAN17 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
9
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 6 NC_041759.1 (174106675..174118432)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 6 NC_027898.1 (175115184..175126952)

Chromosome 6 - NC_041759.1Genomic Context describing neighboring genes Neighboring gene synuclein beta Neighboring gene eukaryotic translation initiation factor 4E family member 1B Neighboring gene uncharacterized LOC106999048 Neighboring gene uncharacterized LOC114678982 Neighboring gene unc-5 netrin receptor A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in protein localization to plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein maturation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of vascular endothelial growth factor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tetraspanin-17
NP_001248457.1
XP_014996954.1
XP_028704952.1
XP_028704953.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001261528.1 → NP_001248457.1  tetraspanin-17

    See identical proteins and their annotated locations for NP_001248457.1

    Status: PROVISIONAL

    Source sequence(s)
    JV046729
    UniProtKB/TrEMBL
    A0A5K1UFU8, F7HM13, I0FQS4
    Related
    ENSMMUP00000000201.4, ENSMMUT00000000214.4
    Conserved Domains (1) summary
    cd03159
    Location:115 → 235
    TM4SF9_like_LEL; Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF9_like subfamily. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment ...

RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041759.1 Reference Mmul_10 Primary Assembly

    Range
    174106675..174118432
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015141468.2 → XP_014996954.1  tetraspanin-17 isoform X2

    UniProtKB/TrEMBL
    A0A5K1UFU8
    Conserved Domains (1) summary
    cd03159
    Location:115 → 238
    TM4SF9_like_LEL; Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF9_like subfamily. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment ...

  2. XM_028849119.1 → XP_028704952.1  tetraspanin-17 isoform X1

    UniProtKB/TrEMBL
    A0A5K1UFU8
    Conserved Domains (1) summary
    cd03159
    Location:115 → 235
    TM4SF9_like_LEL; Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF9_like subfamily. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment ...

  3. XM_028849120.1 → XP_028704953.1  tetraspanin-17 isoform X3

    Conserved Domains (1) summary
    cd03159
    Location:77 → 181
    TM4SF9_like_LEL; Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF9_like subfamily. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment ...

RNA

  1. XR_003730070.1 RNA Sequence

  2. XR_001445675.2 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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