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histone deacetylase [ Arabidopsis thaliana (thale cress) ]

Gene ID: 6240301, updated on 18-Sep-2024

Summary

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Official Full Name
histone deacetylase
Primary source
TAIR:AT4G09784
Locus tag
AT4G09784
See related
Araport:AT4G09784
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 4
Exon count:
3
Sequence:
Chromosome: 4; NC_003075.7 (6162253..6162613)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene non-LTR retroelement reverse transcriptase Neighboring gene TRAF-like family protein Neighboring gene miscRNA Neighboring gene low-molecular-weight cysteine-rich 13

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
histone deacetylase
NP_001154218.1
  • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: histone deacetylase 15 (TAIR:AT3G18520.2); Has 120 Blast hits to 120 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 120; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    6162253..6162613
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001160746.1 → NP_001154218.1  histone deacetylase [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001154218.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654FMV2, F4JKT1
    Conserved Domains (1) summary
    cl17011
    Location:12 → 50
    Arginase_HDAC; Arginase-like and histone-like hydrolases
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Other Literature Sources
Molecular Biology Databases
Research Materials