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si:ch211-285f17.1 si:ch211-285f17.1 [ Danio rerio (zebrafish) ]

Gene ID: 562465, updated on 4-Jan-2025

Summary

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Official Symbol
si:ch211-285f17.1provided by ZNC
Official Full Name
si:ch211-285f17.1provided by ZNC
Primary source
ZFIN:ZDB-GENE-000607-77
See related
Ensembl:ENSDARG00000059333 AllianceGenome:ZFIN:ZDB-GENE-000607-77
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fb79g04; fj77d08; id:ibd5057; wu:fb79g04; wu:fj77d08; si:dkey-96n2.1
Summary
Is expressed in brain; immature eye; and tail bud. Orthologous to human KIAA1217 (KIAA1217). [provided by Alliance of Genome Resources, Jan 2025]
Orthologs
all
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Genomic context

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See si:ch211-285f17.1 in Genome Data Viewer
Location:
chromosome: 24
Exon count:
26
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 24 NC_007135.7 (9304174..9596582)
105 previous assembly GRCz10 (GCF_000002035.5) 24 NC_007135.6 (9231291..9456191)

Chromosome 24 - NC_007135.7Genomic Context describing neighboring genes Neighboring gene OTU domain-containing protein 1 Neighboring gene TGFB-induced factor homeobox 1 Neighboring gene si:dkey-96n2.3 Neighboring gene nephronophthisis 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. A gene expression screen in zebrafish embryogenesis. Kudoh T, et al. Genome Res, 2001 Dec. PMID 11731487
  2. Contrasted innate responses to two viruses in zebrafish: insights into the ancestral repertoire of vertebrate IFN-stimulated genes. Briolat V, et al. J Immunol, 2014 May 1. PMID 24683187
  3. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
  4. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
si:ch211-285f17.1; sickle tail protein homolog
Names
sickle tail-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007135.7 Reference GRCz11 Primary Assembly

    Range
    9304174..9596582
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021470277.2 → XP_021325952.1  sickle tail protein homolog isoform X5

    UniProtKB/TrEMBL
    A0A8M9P621, A0A8M9PXT9
    Conserved Domains (3) summary
    cl26091
    Location:1689 → 1857
    MotB_plug; Membrane MotB of proton-channel complex MotA/MotB
    cl26464
    Location:355 → 643
    Atrophin-1; Atrophin-1 family
    cl27222
    Location:223 → 296
    AIP3; Actin interacting protein 3

  2. XM_021470274.2 → XP_021325949.1  sickle tail protein homolog isoform X1

    UniProtKB/TrEMBL
    A0A8M9PM53, A0A8M9PXT9
    Conserved Domains (3) summary
    cl26091
    Location:1764 → 1932
    MotB_plug; Membrane MotB of proton-channel complex MotA/MotB
    cl26464
    Location:430 → 718
    Atrophin-1; Atrophin-1 family
    cl27222
    Location:298 → 371
    AIP3; Actin interacting protein 3

  3. XM_021470279.2 → XP_021325954.1  sickle tail protein homolog isoform X7

    UniProtKB/TrEMBL
    A0A8M9PM61, A0A8M9PXT9
    Conserved Domains (2) summary
    cl26464
    Location:430 → 718
    Atrophin-1; Atrophin-1 family
    cl27222
    Location:298 → 371
    AIP3; Actin interacting protein 3

  4. XM_021470282.2 → XP_021325957.1  sickle tail protein homolog isoform X10

    UniProtKB/TrEMBL
    A0A8M9P625, A0A8M9PXU4
    Related
    ENSDARP00000076857.5, ENSDART00000082422.6
    Conserved Domains (2) summary
    cl26464
    Location:430 → 718
    Atrophin-1; Atrophin-1 family
    cl27222
    Location:298 → 371
    AIP3; Actin interacting protein 3

  5. XM_021470283.2 → XP_021325958.1  sickle tail protein homolog isoform X11

    UniProtKB/TrEMBL
    A0A8M9PGA9, A0A8M9PXU4
    Conserved Domains (2) summary
    cl26464
    Location:430 → 718
    Atrophin-1; Atrophin-1 family
    cl27222
    Location:298 → 371
    AIP3; Actin interacting protein 3

  6. XM_021470275.2 → XP_021325950.1  sickle tail protein homolog isoform X4

    UniProtKB/TrEMBL
    A0A8M9PXT3, A0A8M9PXT9
    Conserved Domains (2) summary
    cl26464
    Location:430 → 718
    Atrophin-1; Atrophin-1 family
    cl27222
    Location:298 → 371
    AIP3; Actin interacting protein 3

  7. XM_021470284.2 → XP_021325959.1  sickle tail protein homolog isoform X12

    UniProtKB/TrEMBL
    A0A8M9PM64, A0A8M9PXU4
    Conserved Domains (2) summary
    cl26464
    Location:430 → 718
    Atrophin-1; Atrophin-1 family
    cl27222
    Location:298 → 371
    AIP3; Actin interacting protein 3

  8. XM_021470276.2 → XP_021325951.1  sickle tail protein homolog isoform X3

    UniProtKB/TrEMBL
    A0A8M9PUB4, A0A8M9PXT9
    Conserved Domains (3) summary
    cl26091
    Location:1729 → 1897
    MotB_plug; Membrane MotB of proton-channel complex MotA/MotB
    cl26464
    Location:418 → 682
    Atrophin-1; Atrophin-1 family
    cl27222
    Location:298 → 371
    AIP3; Actin interacting protein 3

  9. XM_005162585.5 → XP_005162642.1  sickle tail protein homolog isoform X2

    UniProtKB/TrEMBL
    A0A8M2B9S0, A0A8M9PXT9
    Conserved Domains (2) summary
    smart00806
    Location:612 → 918
    AIP3; Actin interacting protein 3
    pfam03915
    Location:269 → 342
    AIP3; Actin interacting protein 3

  10. XM_021470281.2 → XP_021325956.1  sickle tail protein homolog isoform X8

    UniProtKB/TrEMBL
    A0A8M9PUC0, A0A8M9PXT9
    Conserved Domains (3) summary
    cl26091
    Location:1605 → 1773
    MotB_plug; Membrane MotB of proton-channel complex MotA/MotB
    cl26464
    Location:271 → 559
    Atrophin-1; Atrophin-1 family
    cl27222
    Location:139 → 212
    AIP3; Actin interacting protein 3

  11. XM_021470278.2 → XP_021325953.1  sickle tail protein homolog isoform X6

    UniProtKB/TrEMBL
    A0A8M9PGA5, A0A8M9PXT9
    Conserved Domains (3) summary
    cl26091
    Location:1680 → 1848
    MotB_plug; Membrane MotB of proton-channel complex MotA/MotB
    cl26464
    Location:346 → 634
    Atrophin-1; Atrophin-1 family
    cl27222
    Location:214 → 287
    AIP3; Actin interacting protein 3

  12. XM_005162591.5 → XP_005162648.1  sickle tail protein homolog isoform X9

    UniProtKB/TrEMBL
    A0A8M2B9H3, A0A8N7UV88
    Conserved Domains (2) summary
    smart00806
    Location:381 → 687
    AIP3; Actin interacting protein 3
    pfam03915
    Location:38 → 111
    AIP3; Actin interacting protein 3
Nucleotide Protein Strain
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