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Cutal cutA divalent cation tolerance homolog-like [ Rattus norvegicus (Norway rat) ]

Gene ID: 502617, updated on 27-Nov-2024

Summary

Official Symbol
Cutalprovided by RGD
Official Full Name
cutA divalent cation tolerance homolog-likeprovided by RGD
Primary source
RGD:1564854
See related
EnsemblRapid:ENSRNOG00000018832 AllianceGenome:RGD:1564854
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1564854
Summary
Predicted to enable copper ion binding activity. Predicted to be involved in response to metal ion. [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Liver (RPKM 65.3), Kidney (RPKM 30.4) and 2 other tissues See more
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Genomic context

See Cutal in Genome Data Viewer
Location:
3p11
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 3 NC_086021.1 (38551790..38571209)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 3 NC_051338.1 (18154300..18174957)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 3 NC_005102.4 (13936709..13955651)

Chromosome 3 - NC_086021.1Genomic Context describing neighboring genes Neighboring gene F-box and WD repeat domain containing 2 Neighboring gene beta-1,3-galactosyltransferase 9 Neighboring gene proteasome 26S subunit, non-ATPase 5 Neighboring gene PHD finger protein 19 Neighboring gene RNA, U6 small nuclear 1256 Neighboring gene TNF receptor-associated factor 1

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

General gene information

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables copper ion binding IBA
Inferred from Biological aspect of Ancestor
more info
 
Process Evidence Code Pubs
involved_in response to metal ion IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
uncharacterized protein LOC502617

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001395619.2NP_001382548.1  uncharacterized protein LOC502617

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000003
    UniProtKB/TrEMBL
    A6JUD7, D3ZY56
    Related
    ENSRNOP00000103291.1, ENSRNOT00000148582.1
    Conserved Domains (1) summary
    pfam03091
    Location:55152
    CutA1; CutA1 divalent ion tolerance protein

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086021.1 Reference GRCr8

    Range
    38551790..38571209
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063284398.1XP_063140468.1  uncharacterized protein LOC502617 isoform X1

  2. XM_039105724.2XP_038961652.1  uncharacterized protein LOC502617 isoform X1

    Conserved Domains (1) summary
    pfam03091
    Location:23120
    CutA1; CutA1 divalent ion tolerance protein

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001109341.1: Suppressed sequence

    Description
    NM_001109341.1: This RefSeq was removed because it is a nonsense-mediated mRNA decay (NMD) candidate.