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C19h1orf198 similar to human chromosome 1 open reading frame 198 [ Rattus norvegicus (Norway rat) ]

Gene ID: 498967, updated on 4-Jan-2025

Summary

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Official Symbol
C19h1orf198provided by RGD
Official Full Name
similar to human chromosome 1 open reading frame 198provided by RGD
Primary source
RGD:1559896
See related
EnsemblRapid:ENSRNOG00000018836 AllianceGenome:RGD:1559896
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1559896
Summary
Predicted to be located in cytosol. Orthologous to human C1orf198 (chromosome 1 open reading frame 198). [provided by Alliance of Genome Resources, Jan 2025]
Expression
Biased expression in Lung (RPKM 82.6), Heart (RPKM 72.6) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See C19h1orf198 in Genome Data Viewer
Location:
19q12
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 19 NC_086037.1 (69501453..69526826, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 19 NC_051354.1 (52604060..52629436, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 19 NC_005118.4 (57396606..57422124, complement)

Chromosome 19 - NC_086037.1Genomic Context describing neighboring genes Neighboring gene component of oligomeric golgi complex 2 Neighboring gene angiotensinogen Neighboring gene calpain 9 Neighboring gene uncharacterized LOC120098646 Neighboring gene tetratricopeptide repeat domain 13

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
  
located_in cytosol ISO
Inferred from Sequence Orthology
more info
  

General protein information

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Preferred Names
uncharacterized protein C1orf198 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001109134.1 → NP_001102604.1  uncharacterized protein C1orf198 homolog

    See identical proteins and their annotated locations for NP_001102604.1

    Status: PROVISIONAL

    Source sequence(s)
    CH474054
    UniProtKB/TrEMBL
    A6KJ13, D3ZY47
    Related
    ENSRNOP00000025512.4, ENSRNOT00000025512.6
    Conserved Domains (1) summary
    pfam15797
    Location:31 → 132
    DUF4706; Domain of unknown function (DUF4706)

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086037.1 Reference GRCr8

    Range
    69501453..69526826 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008772643.4 → XP_008770865.1  uncharacterized protein C1orf198 homolog isoform X1

    Conserved Domains (1) summary
    PRK07994
    Location:100 → 184
    PRK07994; DNA polymerase III subunits gamma and tau; Validated
Nucleotide Protein Strain
Heading Accession and Version

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