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Conserved domains on  [gi|157820297|ref|NP_001102604|]
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uncharacterized protein C1orf198 homolog [Rattus norvegicus]

Protein Classification

DUF4706 domain-containing protein( domain architecture ID 11239297)

DUF4706 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF4706 pfam15797
Domain of unknown function (DUF4706); This domain family is found in eukaryotes, and is ...
 31-135 8.41e-42

Domain of unknown function (DUF4706); This domain family is found in eukaryotes, and is approximately 110 amino acids in length.


:

Pssm-ID: 464877  Cd Length: 109  Bit Score: 140.94  E-value: 8.41e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820297   31 TYFSSLSPMARKIMQDKEKIREKYGPEWARLPPAQQDEIIDRCL---VGPRAPAAAADAGDVQDPERFPGLRGPTGQKLV 107
Cdd:pfam15797   1 EYFSSLNPMARRIMEDKEEVKEAYEDRWDRLSPKEQDEAIDESLidpDIRAKYAFDEDDPPKEKPEVFPKLKLQTGQKIV 80

                          90       100
                  ....*....|....*....|....*....
gi 157820297  108 RFGDED-ITWQDEHSAPFSWETRSQMEFS 135
Cdd:pfam15797  81 IDEDEDeITWQDEHSAPFSWETKSQMNLS 109
 
Name Accession Description Interval E-value
DUF4706 pfam15797
Domain of unknown function (DUF4706); This domain family is found in eukaryotes, and is ...
 31-135 8.41e-42

Domain of unknown function (DUF4706); This domain family is found in eukaryotes, and is approximately 110 amino acids in length.


Pssm-ID: 464877  Cd Length: 109  Bit Score: 140.94  E-value: 8.41e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820297   31 TYFSSLSPMARKIMQDKEKIREKYGPEWARLPPAQQDEIIDRCL---VGPRAPAAAADAGDVQDPERFPGLRGPTGQKLV 107
Cdd:pfam15797   1 EYFSSLNPMARRIMEDKEEVKEAYEDRWDRLSPKEQDEAIDESLidpDIRAKYAFDEDDPPKEKPEVFPKLKLQTGQKIV 80

                          90       100
                  ....*....|....*....|....*....
gi 157820297  108 RFGDED-ITWQDEHSAPFSWETRSQMEFS 135
Cdd:pfam15797  81 IDEDEDeITWQDEHSAPFSWETKSQMNLS 109
 
Name Accession Description Interval E-value
DUF4706 pfam15797
Domain of unknown function (DUF4706); This domain family is found in eukaryotes, and is ...
 31-135 8.41e-42

Domain of unknown function (DUF4706); This domain family is found in eukaryotes, and is approximately 110 amino acids in length.


Pssm-ID: 464877  Cd Length: 109  Bit Score: 140.94  E-value: 8.41e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820297   31 TYFSSLSPMARKIMQDKEKIREKYGPEWARLPPAQQDEIIDRCL---VGPRAPAAAADAGDVQDPERFPGLRGPTGQKLV 107
Cdd:pfam15797   1 EYFSSLNPMARRIMEDKEEVKEAYEDRWDRLSPKEQDEAIDESLidpDIRAKYAFDEDDPPKEKPEVFPKLKLQTGQKIV 80

                          90       100
                  ....*....|....*....|....*....
gi 157820297  108 RFGDED-ITWQDEHSAPFSWETRSQMEFS 135
Cdd:pfam15797  81 IDEDEDeITWQDEHSAPFSWETKSQMNLS 109
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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