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nap1l4b nucleosome assembly protein 1-like 4b [ Danio rerio (zebrafish) ]

Gene ID: 492812, updated on 5-Jan-2025

Summary

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Official Symbol
nap1l4bprovided by ZNC
Official Full Name
nucleosome assembly protein 1-like 4bprovided by ZNC
Primary source
ZFIN:ZDB-GENE-041114-168
See related
Ensembl:ENSDARG00000068868 AllianceGenome:ZFIN:ZDB-GENE-041114-168
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:101613
Summary
Predicted to enable chromatin binding activity and histone binding activity. Predicted to be involved in nucleosome assembly. Predicted to be located in chromatin. Predicted to be active in nucleus. Orthologous to human NAP1L4 (nucleosome assembly protein 1 like 4). [provided by Alliance of Genome Resources, Jan 2025]
Orthologs
human mouse all
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Genomic context

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See nap1l4b in Genome Data Viewer
Location:
chromosome: 7
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 7 NC_007118.7 (31776088..31794831, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 7 NC_007118.6 (31504905..31523738, complement)

Chromosome 7 - NC_007118.7Genomic Context describing neighboring genes Neighboring gene immunoglobulin superfamily, DCC subclass, member 3 Neighboring gene immunoglobulin superfamily, DCC subclass, member 4 Neighboring gene uncharacterized LOC137496176 Neighboring gene cysteinyl-tRNA synthetase 1 Neighboring gene myosin binding protein C3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. The miR-144/Hmgn2 regulatory axis orchestrates chromatin organization during erythropoiesis. Kretov DA, et al. Nat Commun, 2024 May 7. PMID 38714702, Free PMC Article
  2. Expression of nucleosome assembly protein 1 like genes in zebrafish embryos. Sun S, et al. Gene Expr Patterns, 2020 Jan. PMID 31669493
  3. Comparative genomic analysis of teleost fish bmal genes. Wang H. Genetica, 2009 May. PMID 18850331
  4. Knockdown screening of chromatin binding and regulatory proteins in zebrafish identified Suz12b as a regulator of tfpia and an antithrombotic drug target. Raman R, et al. Sci Rep, 2021 Jul 27. PMID 34315984, Free PMC Article
  5. A network of epigenetic regulators guides developmental haematopoiesis in vivo. Huang HT, et al. Nat Cell Biol, 2013 Dec. PMID 24240475, Free PMC Article

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables chromatin binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables histone binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in nucleosome assembly IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within nucleosome assembly IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in chromatin IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
nucleosome assembly protein 1-like 4b

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001007453.1 → NP_001007454.1  nucleosome assembly protein 1-like 4b

    See identical proteins and their annotated locations for NP_001007454.1

    Status: PROVISIONAL

    Source sequence(s)
    BC085386
    UniProtKB/TrEMBL
    Q5U3U9
    Related
    ENSDARP00000090521.3, ENSDART00000099748.6
    Conserved Domains (2) summary
    cl14654
    Location:19 → 134
    V_Alix_like; Protein-interacting V-domain of mammalian Alix and related domains
    pfam00956
    Location:48 → 318
    NAP; Nucleosome assembly protein (NAP)

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007118.7 Reference GRCz11 Primary Assembly

    Range
    31776088..31794831 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021477517.2 → XP_021333192.1  nucleosome assembly protein 1-like 4b isoform X4

    UniProtKB/TrEMBL
    A0A8M9PNW3
    Conserved Domains (1) summary
    pfam00956
    Location:33 → 303
    NAP; Nucleosome assembly protein (NAP)

  2. XM_068222286.1 → XP_068078387.1  nucleosome assembly protein 1-like 4b isoform X5

  3. XM_009303210.4 → XP_009301485.1  nucleosome assembly protein 1-like 4b isoform X2

    UniProtKB/TrEMBL
    A0A8M3B448
    Conserved Domains (1) summary
    pfam00956
    Location:48 → 318
    NAP; Nucleosome assembly protein (NAP)

  4. XM_068222284.1 → XP_068078385.1  nucleosome assembly protein 1-like 4b isoform X1

  5. XM_068222285.1 → XP_068078386.1  nucleosome assembly protein 1-like 4b isoform X3

Nucleotide Protein Strain
Heading Accession and Version

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