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Mat89Ba Maternal transcript 89Ba [ Drosophila melanogaster (fruit fly) ]

Gene ID: 41973, updated on 9-Dec-2024

Summary

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Official Symbol
Mat89Baprovided by FlyBase
Official Full Name
Maternal transcript 89Baprovided by FlyBase
Primary source
FLYBASE:FBgn0261286
Locus tag
Dmel_CG12785
See related
AllianceGenome:FB:FBgn0261286
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
CG12785; Dmel\CG12785
Summary
Predicted to enable RNA binding activity. Predicted to be involved in rRNA processing; ribosomal small subunit biogenesis; and tRNA export from nucleus. Predicted to be located in condensed nuclear chromosome and nucleolus. Predicted to be part of CURI complex; UTP-C complex; and small-subunit processome. Is expressed in several structures, including embryonic/larval midgut primordium; female germline cell; foregut primordium; gut section; and larval muscle cell. Orthologous to human NOL6 (nucleolar protein 6). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
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Genomic context

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See Mat89Ba in Genome Data Viewer
Location:
89B9-89B9; 3-58 cM
Exon count:
6
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3R NT_033777.3 (16268329..16272415, complement)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3R NT_033777.2 (12094051..12098137, complement)

Chromosome 3R - NT_033777.3Genomic Context describing neighboring genes Neighboring gene belphegor Neighboring gene asunder Neighboring gene Mst89B Neighboring gene gilgamesh Neighboring gene Zinc/iron regulated transporter-related protein 89B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A testis-specifically expressed gene is embedded within a cluster of maternally expressed genes at 89B in Drosophila melanogaster. Stebbings L, et al. Dev Genes Evol, 1998 Nov. PMID 9799434
  2. Upregulation of ribosome biogenesis via canonical E-boxes is required for Myc-driven proliferation. Zielke N, et al. Dev Cell, 2022 Apr 25. PMID 35472319
  3. Extracting quantitative genetic interaction phenotypes from matrix combinatorial RNAi. Axelsson E, et al. BMC Bioinformatics, 2011 Aug 17. PMID 21849035, Free PMC Article
  4. Nutritional control of protein biosynthetic capacity by insulin via Myc in Drosophila. Teleman AA, et al. Cell Metab, 2008 Jan. PMID 18177722
  5. Transcriptional response to dietary restriction in Drosophila melanogaster. Ding F, et al. J Insect Physiol, 2014 Oct. PMID 24819200, Free PMC Article

See all (37) citations in PubMed

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by FlyBase

Function Evidence Code Pubs
enables RNA binding ISS
Inferred from Sequence or Structural Similarity
more info
  
Process Evidence Code Pubs
involved_in rRNA processing IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in rRNA processing ISS
Inferred from Sequence or Structural Similarity
more info
  
involved_in ribosomal small subunit biogenesis ISS
Inferred from Sequence or Structural Similarity
more info
  
involved_in tRNA export from nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
part_of CURI complex IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of UTP-C complex IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in condensed nuclear chromosome ISS
Inferred from Sequence or Structural Similarity
more info
  
located_in nucleolus ISS
Inferred from Sequence or Structural Similarity
more info
  
part_of small-subunit processome IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of small-subunit processome ISS
Inferred from Sequence or Structural Similarity
more info
  

General protein information

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Preferred Names
maternal transcript 89Ba
Names
CG12785-PA
Mat89Ba-PA

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_033777.3 Reference assembly

    Range
    16268329..16272415 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_142273.4 → NP_650530.2  maternal transcript 89Ba [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_650530.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8IH00, Q9VEX3
    Conserved Domains (1) summary
    pfam03813
    Location:166 → 1130
    Nrap; Nrap protein
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8IH00.1 Q8IH00

Gene LinkOut

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