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fam3a FAM3 metabolism regulating signaling molecule A [ Danio rerio (zebrafish) ]

Gene ID: 393773, updated on 4-Jan-2025

Summary

Official Symbol
fam3aprovided by ZNC
Official Full Name
FAM3 metabolism regulating signaling molecule Aprovided by ZNC
Primary source
ZFIN:ZDB-GENE-040426-1772
See related
Ensembl:ENSDARG00000070675 AllianceGenome:ZFIN:ZDB-GENE-040426-1772
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:73350
Summary
Predicted to enable carbohydrate binding activity. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Orthologous to human FAM3A (FAM3 metabolism regulating signaling molecule A). [provided by Alliance of Genome Resources, Jan 2025]
Orthologs
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Genomic context

See fam3a in Genome Data Viewer
Location:
chromosome: 23
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 23 NC_007134.7 (25135922..25150288)
105 previous assembly GRCz10 (GCF_000002035.5) 23 NC_007134.6 (25209381..25223747)

Chromosome 23 - NC_007134.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103909690 Neighboring gene isocitrate dehydrogenase (NAD(+)) 3 non-catalytic subunit gamma Neighboring gene WNK lysine deficient protein kinase 3 Neighboring gene erb-b2 receptor tyrosine kinase 3b

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Clone Names

  • MGC73350

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
 
enables molecular_function ND
No biological Data available
more info
 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 
is_active_in extracellular space IBA
Inferred from Biological aspect of Ancestor
more info
 

General protein information

Preferred Names
protein FAM3A
Names
family with sequence similarity 3 member A

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_200800.1NP_957094.1  protein FAM3A precursor

    See identical proteins and their annotated locations for NP_957094.1

    Status: PROVISIONAL

    Source sequence(s)
    BC059665
    UniProtKB/TrEMBL
    A0A8M1PDG2, Q6PBL5
    Related
    ENSDARP00000094761.3, ENSDART00000103986.4
    Conserved Domains (1) summary
    cd13940
    Location:53222
    ILEI_FAM3C; Interleukin-like EMT inducer

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007134.7 Reference GRCz11 Primary Assembly

    Range
    25135922..25150288
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018395152.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    37131..51481
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)