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Glt8d2 glycosyltransferase 8 domain containing 2 [ Rattus norvegicus (Norway rat) ]

Gene ID: 366859, updated on 9-Dec-2024

Summary

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Official Symbol
Glt8d2provided by RGD
Official Full Name
glycosyltransferase 8 domain containing 2provided by RGD
Primary source
RGD:1560432
See related
EnsemblRapid:ENSRNOG00000033579 AllianceGenome:RGD:1560432
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1560432
Summary
Predicted to enable UDP-glycosyltransferase activity. Predicted to be active in Golgi apparatus. Orthologous to human GLT8D2 (glycosyltransferase 8 domain containing 2). [provided by Alliance of Genome Resources, Dec 2024]
Expression
Biased expression in Heart (RPKM 19.8), Uterus (RPKM 17.2) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Glt8d2 in Genome Data Viewer
Location:
7q13
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 7 NC_086025.1 (22917055..22968616)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 7 NC_051342.1 (21029534..21081081)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 7 NC_005106.4 (27146382..27196689)

Chromosome 7 - NC_086025.1Genomic Context describing neighboring genes Neighboring gene nuclear transcription factor Y subunit beta Neighboring gene host cell factor C2 Neighboring gene thymine-DNA glycosylase Neighboring gene ubiquinol-cytochrome c reductase complex assembly factor 6 Neighboring gene heat shock protein 90 beta family member 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables UDP-glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in Golgi apparatus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
glycosyltransferase 8 domain-containing protein 2
XP_008763518.1
XP_008763519.1
XP_008763520.1
XP_008763521.1
XP_038936428.1
XP_063120663.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001432431.1 → NP_001419360.1  glycosyltransferase 8 domain-containing protein 2 isoform 1

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000007
    UniProtKB/TrEMBL
    A0A8I6AAY8, A6IFI4

  2. NM_001432436.1 → NP_001419365.1  glycosyltransferase 8 domain-containing protein 2 isoform 2

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000007
    UniProtKB/TrEMBL
    A0A8I6AAY8

  3. NM_001432437.1 → NP_001419366.1  glycosyltransferase 8 domain-containing protein 2 isoform 3

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000007
    UniProtKB/TrEMBL
    A0A8I6ANR7, A6IFI6

  4. NM_001432438.1 → NP_001419367.1  glycosyltransferase 8 domain-containing protein 2 isoform 4

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000007
    UniProtKB/TrEMBL
    A6IFI6

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086025.1 Reference GRCr8

    Range
    22917055..22968616
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008765297.4 → XP_008763519.1  glycosyltransferase 8 domain-containing protein 2 isoform X2

    Related
    ENSRNOP00000089135.2, ENSRNOT00000103757.2
    Conserved Domains (1) summary
    cl11394
    Location:69 → 336
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  2. XM_039080500.2 → XP_038936428.1  glycosyltransferase 8 domain-containing protein 2 isoform X3

    UniProtKB/TrEMBL
    A6IFI6
    Conserved Domains (1) summary
    cl11394
    Location:69 → 279
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  3. XM_008765296.4 → XP_008763518.1  glycosyltransferase 8 domain-containing protein 2 isoform X1

    See identical proteins and their annotated locations for XP_008763518.1

    UniProtKB/TrEMBL
    A6IFI6
    Conserved Domains (1) summary
    cl11394
    Location:69 → 293
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  4. XM_008765298.4 → XP_008763520.1  glycosyltransferase 8 domain-containing protein 2 isoform X5

    Related
    ENSRNOP00000095671.1, ENSRNOT00000105403.2
    Conserved Domains (1) summary
    cl11394
    Location:69 → 293
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  5. XM_008765299.4 → XP_008763521.1  glycosyltransferase 8 domain-containing protein 2 isoform X6

    Conserved Domains (1) summary
    cl11394
    Location:69 → 294
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  6. XM_063264593.1 → XP_063120663.1  glycosyltransferase 8 domain-containing protein 2 isoform X4

Nucleotide Protein Strain
Heading Accession and Version

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