U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Mfsd9 major facilitator superfamily domain containing 9 [ Rattus norvegicus (Norway rat) ]

Gene ID: 316356, updated on 27-Nov-2024

Summary

Go to the top of the page Help
Official Symbol
Mfsd9provided by RGD
Official Full Name
major facilitator superfamily domain containing 9provided by RGD
Primary source
RGD:1562212
See related
EnsemblRapid:ENSRNOG00000023129 AllianceGenome:RGD:1562212
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1562212
Summary
Predicted to enable transmembrane transporter activity. Predicted to be involved in transmembrane transport. Predicted to be located in membrane. Orthologous to human MFSD9 (major facilitator superfamily domain containing 9). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Kidney (RPKM 45.1), Liver (RPKM 38.4) and 9 other tissues See more
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See Mfsd9 in Genome Data Viewer
Location:
9q22
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 9 NC_086027.1 (50515209..50534698, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 9 NC_051344.1 (43019611..43039100, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 9 NC_005108.4 (47496977..47516474, complement)

Chromosome 9 - NC_086027.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134480287 Neighboring gene uncharacterized LOC103690525 Neighboring gene solute carrier family 9 member A2 Neighboring gene transmembrane protein 182 Neighboring gene uncharacterized LOC120094676

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

Go to the top of the page Help
Preferred Names
major facilitator superfamily domain-containing protein 9

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001108215.1 → NP_001101685.1  major facilitator superfamily domain-containing protein 9

    See identical proteins and their annotated locations for NP_001101685.1

    Status: PROVISIONAL

    Source sequence(s)
    CH473965
    UniProtKB/TrEMBL
    A6INP5
    Related
    ENSRNOP00000106582.1, ENSRNOT00000142464.1
    Conserved Domains (2) summary
    cd06174
    Location:36 → 452
    MFS; The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of ...
    pfam07690
    Location:39 → 419
    MFS_1; Major Facilitator Superfamily

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086027.1 Reference GRCr8

    Range
    50515209..50534698 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006244824.5 → XP_006244886.1  major facilitator superfamily domain-containing protein 9 isoform X2

    UniProtKB/TrEMBL
    D3ZTY6
    Related
    ENSRNOP00000102675.1, ENSRNOT00000136383.1
    Conserved Domains (2) summary
    cd06174
    Location:1 → 408
    MFS; The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of ...
    pfam07690
    Location:4 → 375
    MFS_1; Major Facilitator Superfamily

  2. XM_006244823.5 → XP_006244885.1  major facilitator superfamily domain-containing protein 9 isoform X1

    Related
    ENSRNOP00000032132.6, ENSRNOT00000038915.6
    Conserved Domains (2) summary
    cd06174
    Location:41 → 448
    MFS; The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of ...
    pfam07690
    Location:41 → 415
    MFS_1; Major Facilitator Superfamily

  3. XM_039083589.2 → XP_038939517.1  major facilitator superfamily domain-containing protein 9 isoform X4

    Conserved Domains (1) summary
    cl28910
    Location:80 → 261
    MFS; Major Facilitator Superfamily

  4. XM_039083588.2 → XP_038939516.1  major facilitator superfamily domain-containing protein 9 isoform X3

    Conserved Domains (1) summary
    cl28910
    Location:1 → 336
    MFS; Major Facilitator Superfamily
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Chemical Information
Molecular Biology Databases
Research Materials
Tools