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tsp-10 Tetraspanin [ Caenorhabditis elegans ]

Gene ID: 192063, updated on 4-Jan-2025

Summary

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Official Symbol
tsp-10
Official Full Name
Tetraspanin
Primary source
WormBase:WBGene00006636
Locus tag
CELE_T14B4.4
See related
AllianceGenome:WB:WBGene00006636
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to be located in membrane. [provided by Alliance of Genome Resources, Jan 2025]
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Genomic context

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See tsp-10 in Genome Data Viewer
Location:
chromosome: II
Exon count:
8
Sequence:
Chromosome: II; NC_003280.10 (6718586..6720269)

Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene Uncharacterized protein Neighboring gene Transmembrane protein Neighboring gene ncRNA Neighboring gene ANAPC4_WD40 domain-containing protein;DPPIV_N domain-containing protein Neighboring gene tRNA-Leu Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003280.10

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptomics of ivermectin response in Caenorhabditis elegans: Integrating abamectin quantitative trait loci and comparison to the Ivermectin-exposed DA1316 strain. Dube F, et al. PLoS One, 2023. PMID 37141255, Free PMC Article
  2. Amino acid and protein specificity of protein fatty acylation in C. elegans. Zhang B, et al. Proc Natl Acad Sci U S A, 2024 Jan 30. PMID 38252833, Free PMC Article
  3. A map of the interactome network of the metazoan C. elegans. Li S, et al. Science, 2004 Jan 23. PMID 14704431, Free PMC Article
  4. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Tetraspanin
NP_001040805.1
  • Confirmed by transcript evidence
NP_001040806.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003280.10 Reference assembly

    Range
    6718586..6720269
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001047340.5 → NP_001040805.1  Tetraspanin [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001040805.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    H2KYX1
    Conserved Domains (2) summary
    cd03127
    Location:112 → 211
    tetraspanin_LEL; Tetraspanin, extracellular domain or large extracellular loop (LEL). Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the ...
    pfam00335
    Location:50 → 232
    Tetraspannin; Tetraspanin family

  2. NM_001047341.4 → NP_001040806.1  Tetraspanin [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001040806.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    B1Q241
    Conserved Domains (2) summary
    cd03127
    Location:54 → 153
    tetraspanin_LEL; Tetraspanin, extracellular domain or large extracellular loop (LEL). Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the ...
    pfam00335
    Location:2 → 174
    Tetraspannin; Tetraspanin family
Nucleotide Protein
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