U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

zhit-1 HIT-type domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 183878, updated on 9-Dec-2024

Summary

Go to the top of the page Help
Official Symbol
zhit-1
Official Full Name
HIT-type domain-containing protein
Primary source
WormBase:WBGene00016992
Locus tag
CELE_CD4.7
See related
AllianceGenome:WB:WBGene00016992
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable nucleosome binding activity. Predicted to be involved in chromatin remodeling. Predicted to be located in nucleus. Predicted to be part of Swr1 complex. Orthologous to human ZNHIT1 (zinc finger HIT-type containing 1). [provided by Alliance of Genome Resources, Dec 2024]
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See zhit-1 in Genome Data Viewer
Location:
chromosome: V
Exon count:
4
Sequence:
Chromosome: V; NC_003283.11 (5595653..5596551, complement)

Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene VPS37 C-terminal domain-containing protein Neighboring gene Small ribosomal subunit protein uS10 domain-containing protein Neighboring gene Deoxyribonuclease TATDN1 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene SPK domain-containing protein

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003283.11

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Diverse chromatin remodeling genes antagonize the Rb-involved SynMuv pathways in C. elegans. Cui M, et al. PLoS Genet, 2006 May. PMID 16710447, Free PMC Article
  2. OrthoList: a compendium of C. elegans genes with human orthologs. Shaye DD, et al. PLoS One, 2011. PMID 21647448, Free PMC Article
  3. OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes. Kim W, et al. Genetics, 2018 Oct. PMID 30120140, Free PMC Article
  4. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables nucleosome binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of Swr1 complex IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

Go to the top of the page Help
Preferred Names
HIT-type domain-containing protein
NP_001122894.1
  • Confirmed by transcript evidence
NP_504477.2
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003283.11 Reference assembly

    Range
    5595653..5596551 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001129422.3 → NP_001122894.1  HIT-type domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001122894.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A9D699
    Conserved Domains (2) summary
    pfam04438
    Location:154 → 180
    zf-HIT; HIT zinc finger
    cl02154
    Location:100 → 175
    YL1_C; YL1 nuclear protein C-terminal domain

  2. NM_072076.8 → NP_504477.2  HIT-type domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_504477.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    O44161
    Conserved Domains (1) summary
    cl02154
    Location:29 → 101
    YL1_C; YL1 nuclear protein C-terminal domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools